miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13345 3' -57 NC_003409.1 + 4390 0.67 0.782307
Target:  5'- uGGuCAGGuagagcacagaguuGGCCGCaAACAGCuGGGcGCCa -3'
miRNA:   3'- gUC-GUCC--------------UCGGUG-UUGUCGuCCU-CGG- -5'
13345 3' -57 NC_003409.1 + 11020 0.67 0.785108
Target:  5'- gCGGC-GGAGCCcCAACA-CGGGAGg- -3'
miRNA:   3'- -GUCGuCCUCGGuGUUGUcGUCCUCgg -5'
13345 3' -57 NC_003409.1 + 13856 0.68 0.716979
Target:  5'- gCAGuCAGGu-CCugGACcucauacuGCGGGAGCCg -3'
miRNA:   3'- -GUC-GUCCucGGugUUGu-------CGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 16259 0.66 0.838139
Target:  5'- uCAGCgugAGGuG-CugAGCAGCGGGuuugAGCCg -3'
miRNA:   3'- -GUCG---UCCuCgGugUUGUCGUCC----UCGG- -5'
13345 3' -57 NC_003409.1 + 17895 0.67 0.766207
Target:  5'- gAGCGGGAGUUACGaagucucacugaAgGGCGGGgucgcgggucggGGCCg -3'
miRNA:   3'- gUCGUCCUCGGUGU------------UgUCGUCC------------UCGG- -5'
13345 3' -57 NC_003409.1 + 21769 0.68 0.686472
Target:  5'- aGGCAGucAGCacaGCGACgAGCAGGAuGCCc -3'
miRNA:   3'- gUCGUCc-UCGg--UGUUG-UCGUCCU-CGG- -5'
13345 3' -57 NC_003409.1 + 24271 0.79 0.18758
Target:  5'- gCAGCaccccAGGAGCCcCGGCAGCaccccAGGAGCCc -3'
miRNA:   3'- -GUCG-----UCCUCGGuGUUGUCG-----UCCUCGG- -5'
13345 3' -57 NC_003409.1 + 24311 0.79 0.18758
Target:  5'- gCAGCaccccAGGAGCCcCGGCAGCaccccAGGAGCCc -3'
miRNA:   3'- -GUCG-----UCCUCGGuGUUGUCG-----UCCUCGG- -5'
13345 3' -57 NC_003409.1 + 24351 0.79 0.18758
Target:  5'- gCAGCaccccAGGAGCCcCGGCAGCaccccAGGAGCCc -3'
miRNA:   3'- -GUCG-----UCCUCGGuGUUGUCG-----UCCUCGG- -5'
13345 3' -57 NC_003409.1 + 24391 0.79 0.18758
Target:  5'- gCAGCaccccAGGAGCCcCGGCAGCaccccAGGAGCCc -3'
miRNA:   3'- -GUCG-----UCCUCGGuGUUGUCG-----UCCUCGG- -5'
13345 3' -57 NC_003409.1 + 24431 0.79 0.18758
Target:  5'- gCAGCaccccAGGAGCCcCGGCAGCaccccAGGAGCCc -3'
miRNA:   3'- -GUCG-----UCCUCGGuGUUGUCG-----UCCUCGG- -5'
13345 3' -57 NC_003409.1 + 24471 0.79 0.18758
Target:  5'- gCAGCaccccAGGAGCCcCGGCAGCaccccAGGAGCCc -3'
miRNA:   3'- -GUCG-----UCCUCGGuGUUGUCG-----UCCUCGG- -5'
13345 3' -57 NC_003409.1 + 24511 0.79 0.18758
Target:  5'- gCAGCaccccAGGAGCCcCGGCAGCaccccAGGAGCCc -3'
miRNA:   3'- -GUCG-----UCCUCGGuGUUGUCG-----UCCUCGG- -5'
13345 3' -57 NC_003409.1 + 24551 0.79 0.18758
Target:  5'- gCAGCaccccAGGAGCCcCGGCAGCaccccAGGAGCCc -3'
miRNA:   3'- -GUCG-----UCCUCGGuGUUGUCG-----UCCUCGG- -5'
13345 3' -57 NC_003409.1 + 26696 0.67 0.775723
Target:  5'- aGGCGGGAua-GCGACAGUAGG-GCg -3'
miRNA:   3'- gUCGUCCUcggUGUUGUCGUCCuCGg -5'
13345 3' -57 NC_003409.1 + 27118 0.67 0.756568
Target:  5'- uGGCAGGcAGCCGCuGCAuCAGcuGCCu -3'
miRNA:   3'- gUCGUCC-UCGGUGuUGUcGUCcuCGG- -5'
13345 3' -57 NC_003409.1 + 30614 0.69 0.655548
Target:  5'- uGGCAGcGGUCGCGAUgAGCAGGAGa- -3'
miRNA:   3'- gUCGUCcUCGGUGUUG-UCGUCCUCgg -5'
13345 3' -57 NC_003409.1 + 30969 0.69 0.665887
Target:  5'- aGGCGGGGGUgGguuCAGCGGguGGugcGCCa -3'
miRNA:   3'- gUCGUCCUCGgU---GUUGUCguCCu--CGG- -5'
13345 3' -57 NC_003409.1 + 31374 0.71 0.546371
Target:  5'- -cGCAGG-GCCACcgccguccuccucuGCAGCAGcAGCCg -3'
miRNA:   3'- guCGUCCuCGGUGu-------------UGUCGUCcUCGG- -5'
13345 3' -57 NC_003409.1 + 33025 0.66 0.838139
Target:  5'- gCAGUAGcccGCCGCAaggaGCAGCcugcagGGGAGCa -3'
miRNA:   3'- -GUCGUCcu-CGGUGU----UGUCG------UCCUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.