miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13345 3' -57 NC_003409.1 + 24271 0.79 0.18758
Target:  5'- gCAGCaccccAGGAGCCcCGGCAGCaccccAGGAGCCc -3'
miRNA:   3'- -GUCG-----UCCUCGGuGUUGUCG-----UCCUCGG- -5'
13345 3' -57 NC_003409.1 + 103623 0.68 0.6967
Target:  5'- -uGCAGGG---ACAACGGCAGGGGgCg -3'
miRNA:   3'- guCGUCCUcggUGUUGUCGUCCUCgG- -5'
13345 3' -57 NC_003409.1 + 13856 0.68 0.716979
Target:  5'- gCAGuCAGGu-CCugGACcucauacuGCGGGAGCCg -3'
miRNA:   3'- -GUC-GUCCucGGugUUGu-------CGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 108694 0.65 0.843908
Target:  5'- gGGaCAGGAgGCCAUGGCGGCcauuaagcgguuuaGGGAcucGCCc -3'
miRNA:   3'- gUC-GUCCU-CGGUGUUGUCG--------------UCCU---CGG- -5'
13345 3' -57 NC_003409.1 + 24431 0.79 0.18758
Target:  5'- gCAGCaccccAGGAGCCcCGGCAGCaccccAGGAGCCc -3'
miRNA:   3'- -GUCG-----UCCUCGGuGUUGUCG-----UCCUCGG- -5'
13345 3' -57 NC_003409.1 + 24471 0.79 0.18758
Target:  5'- gCAGCaccccAGGAGCCcCGGCAGCaccccAGGAGCCc -3'
miRNA:   3'- -GUCG-----UCCUCGGuGUUGUCG-----UCCUCGG- -5'
13345 3' -57 NC_003409.1 + 24551 0.79 0.18758
Target:  5'- gCAGCaccccAGGAGCCcCGGCAGCaccccAGGAGCCc -3'
miRNA:   3'- -GUCG-----UCCUCGGuGUUGUCG-----UCCUCGG- -5'
13345 3' -57 NC_003409.1 + 73989 0.74 0.400745
Target:  5'- aCGGCGGcGGCUACGGCGGCAGaGGCg -3'
miRNA:   3'- -GUCGUCcUCGGUGUUGUCGUCcUCGg -5'
13345 3' -57 NC_003409.1 + 35234 0.7 0.614084
Target:  5'- gAGUacuugAGGAGCCG--GCGGUAGGuGGCCa -3'
miRNA:   3'- gUCG-----UCCUCGGUguUGUCGUCC-UCGG- -5'
13345 3' -57 NC_003409.1 + 21769 0.68 0.686472
Target:  5'- aGGCAGucAGCacaGCGACgAGCAGGAuGCCc -3'
miRNA:   3'- gUCGUCc-UCGg--UGUUG-UCGUCCU-CGG- -5'
13345 3' -57 NC_003409.1 + 30614 0.69 0.655548
Target:  5'- uGGCAGcGGUCGCGAUgAGCAGGAGa- -3'
miRNA:   3'- gUCGUCcUCGGUGUUG-UCGUCCUCgg -5'
13345 3' -57 NC_003409.1 + 72845 0.7 0.603733
Target:  5'- aCAGaaaAGGAuuucugacaGCCGCAuGCAGCGGGgugAGCCu -3'
miRNA:   3'- -GUCg--UCCU---------CGGUGU-UGUCGUCC---UCGG- -5'
13345 3' -57 NC_003409.1 + 24311 0.79 0.18758
Target:  5'- gCAGCaccccAGGAGCCcCGGCAGCaccccAGGAGCCc -3'
miRNA:   3'- -GUCG-----UCCUCGGuGUUGUCG-----UCCUCGG- -5'
13345 3' -57 NC_003409.1 + 30969 0.69 0.665887
Target:  5'- aGGCGGGGGUgGguuCAGCGGguGGugcGCCa -3'
miRNA:   3'- gUCGUCCUCGgU---GUUGUCguCCu--CGG- -5'
13345 3' -57 NC_003409.1 + 24351 0.79 0.18758
Target:  5'- gCAGCaccccAGGAGCCcCGGCAGCaccccAGGAGCCc -3'
miRNA:   3'- -GUCG-----UCCUCGGuGUUGUCG-----UCCUCGG- -5'
13345 3' -57 NC_003409.1 + 88673 0.7 0.572839
Target:  5'- aGGCGGGAuaucGCUGcCGGCAgGCAGGGGCg -3'
miRNA:   3'- gUCGUCCU----CGGU-GUUGU-CGUCCUCGg -5'
13345 3' -57 NC_003409.1 + 130947 0.69 0.665887
Target:  5'- --cCAGG-GCCAcCAGCAGCuGGaAGCCc -3'
miRNA:   3'- gucGUCCuCGGU-GUUGUCGuCC-UCGG- -5'
13345 3' -57 NC_003409.1 + 131523 0.68 0.6967
Target:  5'- cCAGUGGGuguGCCAC-GCAGCGGuAGUCc -3'
miRNA:   3'- -GUCGUCCu--CGGUGuUGUCGUCcUCGG- -5'
13345 3' -57 NC_003409.1 + 24391 0.79 0.18758
Target:  5'- gCAGCaccccAGGAGCCcCGGCAGCaccccAGGAGCCc -3'
miRNA:   3'- -GUCG-----UCCUCGGuGUUGUCG-----UCCUCGG- -5'
13345 3' -57 NC_003409.1 + 24511 0.79 0.18758
Target:  5'- gCAGCaccccAGGAGCCcCGGCAGCaccccAGGAGCCc -3'
miRNA:   3'- -GUCG-----UCCUCGGuGUUGUCG-----UCCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.