miRNA display CGI


Results 1 - 20 of 103 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13345 3' -57 NC_003409.1 + 125908 1.12 0.001007
Target:  5'- aCAGCAGGAGCCACAGCAGCAGGAGCCa -3'
miRNA:   3'- -GUCGUCCUCGGUGUUGUCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 125809 1.12 0.001007
Target:  5'- aCAGCAGGAGCCACAACAGCAGGAGCCa -3'
miRNA:   3'- -GUCGUCCUCGGUGUUGUCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 125965 1.12 0.001007
Target:  5'- aCAGCAGGAGCCACAGCAGCAGGAGCCa -3'
miRNA:   3'- -GUCGUCCUCGGUGUUGUCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 125779 1.12 0.001096
Target:  5'- gCAGCAGGAGCCACAGCAGCAGGAGCCa -3'
miRNA:   3'- -GUCGUCCUCGGUGUUGUCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 125689 1.12 0.001096
Target:  5'- gCAGCAGGAGCCACAGCAGCAGGAGCCa -3'
miRNA:   3'- -GUCGUCCUCGGUGUUGUCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 125719 1.12 0.001096
Target:  5'- gCAGCAGGAGCCACAGCAGCAGGAGCCa -3'
miRNA:   3'- -GUCGUCCUCGGUGUUGUCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 125749 1.12 0.001096
Target:  5'- gCAGCAGGAGCCACAGCAGCAGGAGCCa -3'
miRNA:   3'- -GUCGUCCUCGGUGUUGUCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 125851 1.11 0.001298
Target:  5'- aCAGCAGGAGCCACAGCAGCAGGAGCCc -3'
miRNA:   3'- -GUCGUCCUCGGUGUUGUCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 125569 1.09 0.001626
Target:  5'- gCAGCGGGAGCCACAGCAGCGGGAGCCa -3'
miRNA:   3'- -GUCGUCCUCGGUGUUGUCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 125629 1.09 0.001626
Target:  5'- gCAGCGGGAGCCACAGCAGCGGGAGCCa -3'
miRNA:   3'- -GUCGUCCUCGGUGUUGUCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 125599 1.09 0.001626
Target:  5'- gCAGCGGGAGCCACAGCAGCGGGAGCCa -3'
miRNA:   3'- -GUCGUCCUCGGUGUUGUCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 125659 1.08 0.002095
Target:  5'- gCAGCGGGAGCCACAGCAGCGGGAGCCc -3'
miRNA:   3'- -GUCGUCCUCGGUGUUGUCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 125542 0.89 0.044313
Target:  5'- aCAGCAgcGGAGCCACAGCAGCAGGAugaGCa -3'
miRNA:   3'- -GUCGU--CCUCGGUGUUGUCGUCCU---CGg -5'
13345 3' -57 NC_003409.1 + 125878 0.85 0.080823
Target:  5'- gCAGCAGGAGCCcCu---GCAGGAGCCa -3'
miRNA:   3'- -GUCGUCCUCGGuGuuguCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 125935 0.85 0.080823
Target:  5'- gCAGCAGGAGCCcCu---GCAGGAGCCa -3'
miRNA:   3'- -GUCGUCCUCGGuGuuguCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 124555 0.83 0.102927
Target:  5'- gAGCAGGAGCaGCAgggggugaACAGCAGGAGCa -3'
miRNA:   3'- gUCGUCCUCGgUGU--------UGUCGUCCUCGg -5'
13345 3' -57 NC_003409.1 + 124972 0.81 0.137664
Target:  5'- gAGCAGGAGUUAgAGgAGCAGGAGCa -3'
miRNA:   3'- gUCGUCCUCGGUgUUgUCGUCCUCGg -5'
13345 3' -57 NC_003409.1 + 124888 0.81 0.137664
Target:  5'- gAGCAGGAGUUAgAGgAGCAGGAGCa -3'
miRNA:   3'- gUCGUCCUCGGUgUUgUCGUCCUCGg -5'
13345 3' -57 NC_003409.1 + 124846 0.81 0.137664
Target:  5'- gAGCAGGAGUUAgAGgAGCAGGAGCa -3'
miRNA:   3'- gUCGUCCUCGGUgUUgUCGUCCUCGg -5'
13345 3' -57 NC_003409.1 + 125014 0.81 0.137664
Target:  5'- gAGCAGGAGUUAgAGgAGCAGGAGCa -3'
miRNA:   3'- gUCGUCCUCGGUgUUgUCGUCCUCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.