miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13345 5' -60.4 NC_003409.1 + 72863 0.71 0.398529
Target:  5'- -cAGCCGCAuGCAGCGGGGuGagCCUGCc -3'
miRNA:   3'- ccUCGGUGU-CGUCGUCCU-CggGGACG- -5'
13345 5' -60.4 NC_003409.1 + 24421 0.88 0.030449
Target:  5'- aGGAGCCcCGGCAGCaccccAGGAGCCCCgGCa -3'
miRNA:   3'- -CCUCGGuGUCGUCG-----UCCUCGGGGaCG- -5'
13345 5' -60.4 NC_003409.1 + 24581 0.66 0.674964
Target:  5'- aGGAGCCcCGGCGcGCcacccuccccggaGGGGGaUCCCgGCg -3'
miRNA:   3'- -CCUCGGuGUCGU-CG-------------UCCUC-GGGGaCG- -5'
13345 5' -60.4 NC_003409.1 + 102291 0.67 0.595352
Target:  5'- cGGuGCCugGGCAGCuacAGUCCCaccgGCu -3'
miRNA:   3'- -CCuCGGugUCGUCGuccUCGGGGa---CG- -5'
13345 5' -60.4 NC_003409.1 + 103891 0.7 0.44187
Target:  5'- -aGGCCAUGGCAGCcc-AGCCUCUGUa -3'
miRNA:   3'- ccUCGGUGUCGUCGuccUCGGGGACG- -5'
13345 5' -60.4 NC_003409.1 + 24381 0.88 0.030449
Target:  5'- aGGAGCCcCGGCAGCaccccAGGAGCCCCgGCa -3'
miRNA:   3'- -CCUCGGuGUCGUCG-----UCCUCGGGGaCG- -5'
13345 5' -60.4 NC_003409.1 + 61586 0.67 0.591334
Target:  5'- uGGAGCCugAGguGagaccuacuGUCCCUGCu -3'
miRNA:   3'- -CCUCGGugUCguCguccu----CGGGGACG- -5'
13345 5' -60.4 NC_003409.1 + 24341 0.88 0.030449
Target:  5'- aGGAGCCcCGGCAGCaccccAGGAGCCCCgGCa -3'
miRNA:   3'- -CCUCGGuGUCGUCG-----UCCUCGGGGaCG- -5'
13345 5' -60.4 NC_003409.1 + 24301 0.88 0.030449
Target:  5'- aGGAGCCcCGGCAGCaccccAGGAGCCCCgGCa -3'
miRNA:   3'- -CCUCGGuGUCGUCG-----UCCUCGGGGaCG- -5'
13345 5' -60.4 NC_003409.1 + 130949 0.72 0.35801
Target:  5'- aGGGCCAcCAGCAGCuGGAaGCCCaccucGCc -3'
miRNA:   3'- cCUCGGU-GUCGUCGuCCU-CGGGga---CG- -5'
13345 5' -60.4 NC_003409.1 + 70540 0.7 0.459938
Target:  5'- uGGGG-CGCGGCAGCugacucaaaaAGGucacuGCCUCUGCc -3'
miRNA:   3'- -CCUCgGUGUCGUCG----------UCCu----CGGGGACG- -5'
13345 5' -60.4 NC_003409.1 + 21769 0.69 0.506731
Target:  5'- aGGcAGUcagCACAGCgacgAGCAGGAuGCCCUUGg -3'
miRNA:   3'- -CC-UCG---GUGUCG----UCGUCCU-CGGGGACg -5'
13345 5' -60.4 NC_003409.1 + 125766 0.67 0.615493
Target:  5'- --uGCUGuugUGGCuccuGCAGGGGCUCCUGCu -3'
miRNA:   3'- ccuCGGU---GUCGu---CGUCCUCGGGGACG- -5'
13345 5' -60.4 NC_003409.1 + 90286 0.67 0.635683
Target:  5'- -cAGCCGaGGCGGCGauuGAGCCCuCUGUu -3'
miRNA:   3'- ccUCGGUgUCGUCGUc--CUCGGG-GACG- -5'
13345 5' -60.4 NC_003409.1 + 115158 0.66 0.685971
Target:  5'- cGA-CCAUGGCGGCAGcGGCagaCCUGUg -3'
miRNA:   3'- cCUcGGUGUCGUCGUCcUCGg--GGACG- -5'
13345 5' -60.4 NC_003409.1 + 108699 0.71 0.371458
Target:  5'- aGGAgGCCAUGGCGGCcauuaagcgguuuaGGGAcucGCCCCaGCu -3'
miRNA:   3'- -CCU-CGGUGUCGUCG--------------UCCU---CGGGGaCG- -5'
13345 5' -60.4 NC_003409.1 + 24461 0.88 0.030449
Target:  5'- aGGAGCCcCGGCAGCaccccAGGAGCCCCgGCa -3'
miRNA:   3'- -CCUCGGuGUCGUCG-----UCCUCGGGGaCG- -5'
13345 5' -60.4 NC_003409.1 + 107805 0.73 0.312612
Target:  5'- -aGGCCACGGUgGGCAcgccccuGGAGCuCCCUGCc -3'
miRNA:   3'- ccUCGGUGUCG-UCGU-------CCUCG-GGGACG- -5'
13345 5' -60.4 NC_003409.1 + 125564 0.93 0.013118
Target:  5'- gGGAGCCACAGCAGCGGGAGCCaCaGCa -3'
miRNA:   3'- -CCUCGGUGUCGUCGUCCUCGGgGaCG- -5'
13345 5' -60.4 NC_003409.1 + 24567 0.68 0.545571
Target:  5'- cGGGGCucCugGGguGCugccGGGGCUCCUGg -3'
miRNA:   3'- -CCUCG--GugUCguCGu---CCUCGGGGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.