miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13345 5' -60.4 NC_003409.1 + 24261 0.88 0.030449
Target:  5'- aGGAGCCcCGGCAGCaccccAGGAGCCCCgGCa -3'
miRNA:   3'- -CCUCGGuGUCGUCG-----UCCUCGGGGaCG- -5'
13345 5' -60.4 NC_003409.1 + 42701 0.7 0.44187
Target:  5'- -cGGUgGCAGUAGUAGGGGgCCCUcgaGCg -3'
miRNA:   3'- ccUCGgUGUCGUCGUCCUCgGGGA---CG- -5'
13345 5' -60.4 NC_003409.1 + 70540 0.7 0.459938
Target:  5'- uGGGG-CGCGGCAGCugacucaaaaAGGucacuGCCUCUGCc -3'
miRNA:   3'- -CCUCgGUGUCGUCG----------UCCu----CGGGGACG- -5'
13345 5' -60.4 NC_003409.1 + 11007 0.66 0.695932
Target:  5'- aGGGCaccuccUAGCGGC-GGAGCCCCa-- -3'
miRNA:   3'- cCUCGgu----GUCGUCGuCCUCGGGGacg -5'
13345 5' -60.4 NC_003409.1 + 24421 0.88 0.030449
Target:  5'- aGGAGCCcCGGCAGCaccccAGGAGCCCCgGCa -3'
miRNA:   3'- -CCUCGGuGUCGUCG-----UCCUCGGGGaCG- -5'
13345 5' -60.4 NC_003409.1 + 24461 0.88 0.030449
Target:  5'- aGGAGCCcCGGCAGCaccccAGGAGCCCCgGCa -3'
miRNA:   3'- -CCUCGGuGUCGUCG-----UCCUCGGGGaCG- -5'
13345 5' -60.4 NC_003409.1 + 24541 0.88 0.030449
Target:  5'- aGGAGCCcCGGCAGCaccccAGGAGCCCCgGCa -3'
miRNA:   3'- -CCUCGGuGUCGUCG-----UCCUCGGGGaCG- -5'
13345 5' -60.4 NC_003409.1 + 107805 0.73 0.312612
Target:  5'- -aGGCCACGGUgGGCAcgccccuGGAGCuCCCUGCc -3'
miRNA:   3'- ccUCGGUGUCG-UCGU-------CCUCG-GGGACG- -5'
13345 5' -60.4 NC_003409.1 + 130949 0.72 0.35801
Target:  5'- aGGGCCAcCAGCAGCuGGAaGCCCaccucGCc -3'
miRNA:   3'- cCUCGGU-GUCGUCGuCCU-CGGGga---CG- -5'
13345 5' -60.4 NC_003409.1 + 125686 0.7 0.42421
Target:  5'- aGGGGCUccugcugcugugGCuccugcuguuguGGCuccuGCAGGGGCUCCUGCu -3'
miRNA:   3'- -CCUCGG------------UG------------UCGu---CGUCCUCGGGGACG- -5'
13345 5' -60.4 NC_003409.1 + 118873 0.71 0.373867
Target:  5'- uGGAGUgGCGGUgGGCGGG-GCCCCUa- -3'
miRNA:   3'- -CCUCGgUGUCG-UCGUCCuCGGGGAcg -5'
13345 5' -60.4 NC_003409.1 + 131528 0.72 0.335121
Target:  5'- gGGuguGCCAC-GCAGCGGuAGUCCCUGg -3'
miRNA:   3'- -CCu--CGGUGuCGUCGUCcUCGGGGACg -5'
13345 5' -60.4 NC_003409.1 + 24301 0.88 0.030449
Target:  5'- aGGAGCCcCGGCAGCaccccAGGAGCCCCgGCa -3'
miRNA:   3'- -CCUCGGuGUCGUCG-----UCCUCGGGGaCG- -5'
13345 5' -60.4 NC_003409.1 + 35243 0.71 0.381156
Target:  5'- aGGAGCCgGCGGUAGguGGccaggugGGCCCgguuacCUGCu -3'
miRNA:   3'- -CCUCGG-UGUCGUCguCC-------UCGGG------GACG- -5'
13345 5' -60.4 NC_003409.1 + 24341 0.88 0.030449
Target:  5'- aGGAGCCcCGGCAGCaccccAGGAGCCCCgGCa -3'
miRNA:   3'- -CCUCGGuGUCGUCG-----UCCUCGGGGaCG- -5'
13345 5' -60.4 NC_003409.1 + 88209 0.72 0.335121
Target:  5'- aGGGGgaGCAGguGCuGcAGCCCCUGCc -3'
miRNA:   3'- -CCUCggUGUCguCGuCcUCGGGGACG- -5'
13345 5' -60.4 NC_003409.1 + 72863 0.71 0.398529
Target:  5'- -cAGCCGCAuGCAGCGGGGuGagCCUGCc -3'
miRNA:   3'- ccUCGGUGU-CGUCGUCCU-CggGGACG- -5'
13345 5' -60.4 NC_003409.1 + 103891 0.7 0.44187
Target:  5'- -aGGCCAUGGCAGCcc-AGCCUCUGUa -3'
miRNA:   3'- ccUCGGUGUCGUCGuccUCGGGGACG- -5'
13345 5' -60.4 NC_003409.1 + 24381 0.88 0.030449
Target:  5'- aGGAGCCcCGGCAGCaccccAGGAGCCCCgGCa -3'
miRNA:   3'- -CCUCGGuGUCGUCG-----UCCUCGGGGaCG- -5'
13345 5' -60.4 NC_003409.1 + 24501 0.88 0.030449
Target:  5'- aGGAGCCcCGGCAGCaccccAGGAGCCCCgGCa -3'
miRNA:   3'- -CCUCGGuGUCGUCG-----UCCUCGGGGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.