miRNA display CGI


Results 1 - 20 of 78 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13345 5' -60.4 NC_003409.1 + 3688 0.68 0.535762
Target:  5'- aGGAGagacugUACGGCGGCAaacuGGuGCCCgUGCc -3'
miRNA:   3'- -CCUCg-----GUGUCGUCGU----CCuCGGGgACG- -5'
13345 5' -60.4 NC_003409.1 + 6279 0.69 0.487754
Target:  5'- -aAGCCACcuCGGU-GGAGCUCCUGUg -3'
miRNA:   3'- ccUCGGUGucGUCGuCCUCGGGGACG- -5'
13345 5' -60.4 NC_003409.1 + 11007 0.66 0.695932
Target:  5'- aGGGCaccuccUAGCGGC-GGAGCCCCa-- -3'
miRNA:   3'- cCUCGgu----GUCGUCGuCCUCGGGGacg -5'
13345 5' -60.4 NC_003409.1 + 18940 0.66 0.645778
Target:  5'- cGGGGCCAUcuuGGUcGCcuGGAcuGCCCCcGCg -3'
miRNA:   3'- -CCUCGGUG---UCGuCGu-CCU--CGGGGaCG- -5'
13345 5' -60.4 NC_003409.1 + 18972 0.66 0.685971
Target:  5'- cGGGGCCAUuuuGGUcGCcuGGAgcuGCCCCcGCg -3'
miRNA:   3'- -CCUCGGUG---UCGuCGu-CCU---CGGGGaCG- -5'
13345 5' -60.4 NC_003409.1 + 19150 0.66 0.665928
Target:  5'- aGGGGcCCGCgggGGCAGCuccAGGcgaccaaaauGGCCCC-GCg -3'
miRNA:   3'- -CCUC-GGUG---UCGUCG---UCC----------UCGGGGaCG- -5'
13345 5' -60.4 NC_003409.1 + 19288 0.67 0.635683
Target:  5'- --cGUCGCAGCGGCaAGGccagcGGCCCCcaaUGUc -3'
miRNA:   3'- ccuCGGUGUCGUCG-UCC-----UCGGGG---ACG- -5'
13345 5' -60.4 NC_003409.1 + 21769 0.69 0.506731
Target:  5'- aGGcAGUcagCACAGCgacgAGCAGGAuGCCCUUGg -3'
miRNA:   3'- -CC-UCG---GUGUCG----UCGUCCU-CGGGGACg -5'
13345 5' -60.4 NC_003409.1 + 24215 0.7 0.42421
Target:  5'- uGGGGCgCGcCAGCGGUGGGcggGGCCCCa-- -3'
miRNA:   3'- -CCUCG-GU-GUCGUCGUCC---UCGGGGacg -5'
13345 5' -60.4 NC_003409.1 + 24261 0.88 0.030449
Target:  5'- aGGAGCCcCGGCAGCaccccAGGAGCCCCgGCa -3'
miRNA:   3'- -CCUCGGuGUCGUCG-----UCCUCGGGGaCG- -5'
13345 5' -60.4 NC_003409.1 + 24301 0.88 0.030449
Target:  5'- aGGAGCCcCGGCAGCaccccAGGAGCCCCgGCa -3'
miRNA:   3'- -CCUCGGuGUCGUCG-----UCCUCGGGGaCG- -5'
13345 5' -60.4 NC_003409.1 + 24341 0.88 0.030449
Target:  5'- aGGAGCCcCGGCAGCaccccAGGAGCCCCgGCa -3'
miRNA:   3'- -CCUCGGuGUCGUCG-----UCCUCGGGGaCG- -5'
13345 5' -60.4 NC_003409.1 + 24381 0.88 0.030449
Target:  5'- aGGAGCCcCGGCAGCaccccAGGAGCCCCgGCa -3'
miRNA:   3'- -CCUCGGuGUCGUCG-----UCCUCGGGGaCG- -5'
13345 5' -60.4 NC_003409.1 + 24421 0.88 0.030449
Target:  5'- aGGAGCCcCGGCAGCaccccAGGAGCCCCgGCa -3'
miRNA:   3'- -CCUCGGuGUCGUCG-----UCCUCGGGGaCG- -5'
13345 5' -60.4 NC_003409.1 + 24447 0.68 0.545571
Target:  5'- cGGGGCucCugGGguGCugccGGGGCUCCUGg -3'
miRNA:   3'- -CCUCG--GugUCguCGu---CCUCGGGGACg -5'
13345 5' -60.4 NC_003409.1 + 24461 0.88 0.030449
Target:  5'- aGGAGCCcCGGCAGCaccccAGGAGCCCCgGCa -3'
miRNA:   3'- -CCUCGGuGUCGUCG-----UCCUCGGGGaCG- -5'
13345 5' -60.4 NC_003409.1 + 24487 0.68 0.545571
Target:  5'- cGGGGCucCugGGguGCugccGGGGCUCCUGg -3'
miRNA:   3'- -CCUCG--GugUCguCGu---CCUCGGGGACg -5'
13345 5' -60.4 NC_003409.1 + 24501 0.88 0.030449
Target:  5'- aGGAGCCcCGGCAGCaccccAGGAGCCCCgGCa -3'
miRNA:   3'- -CCUCGGuGUCGUCG-----UCCUCGGGGaCG- -5'
13345 5' -60.4 NC_003409.1 + 24527 0.68 0.545571
Target:  5'- cGGGGCucCugGGguGCugccGGGGCUCCUGg -3'
miRNA:   3'- -CCUCG--GugUCguCGu---CCUCGGGGACg -5'
13345 5' -60.4 NC_003409.1 + 24541 0.88 0.030449
Target:  5'- aGGAGCCcCGGCAGCaccccAGGAGCCCCgGCa -3'
miRNA:   3'- -CCUCGGuGUCGUCG-----UCCUCGGGGaCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.