Results 1 - 20 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13345 | 5' | -60.4 | NC_003409.1 | + | 125945 | 1.13 | 0.000427 |
Target: 5'- aGGAGCCACAGCAGCAGGAGCCCCUGCa -3' miRNA: 3'- -CCUCGGUGUCGUCGUCCUCGGGGACG- -5' |
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13345 | 5' | -60.4 | NC_003409.1 | + | 125846 | 1.13 | 0.000427 |
Target: 5'- aGGAGCCACAGCAGCAGGAGCCCCUGCa -3' miRNA: 3'- -CCUCGGUGUCGUCGUCCUCGGGGACG- -5' |
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13345 | 5' | -60.4 | NC_003409.1 | + | 125888 | 1.13 | 0.000427 |
Target: 5'- aGGAGCCACAGCAGCAGGAGCCCCUGCa -3' miRNA: 3'- -CCUCGGUGUCGUCGUCCUCGGGGACG- -5' |
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13345 | 5' | -60.4 | NC_003409.1 | + | 125654 | 1.04 | 0.001931 |
Target: 5'- gGGAGCCACAGCAGCGGGAGCCCCaGCa -3' miRNA: 3'- -CCUCGGUGUCGUCGUCCUCGGGGaCG- -5' |
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13345 | 5' | -60.4 | NC_003409.1 | + | 125729 | 0.94 | 0.010261 |
Target: 5'- aGGAGCCACAGCAGCAGGAGCCaCaGCa -3' miRNA: 3'- -CCUCGGUGUCGUCGUCCUCGGgGaCG- -5' |
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13345 | 5' | -60.4 | NC_003409.1 | + | 125699 | 0.94 | 0.010261 |
Target: 5'- aGGAGCCACAGCAGCAGGAGCCaCaGCa -3' miRNA: 3'- -CCUCGGUGUCGUCGUCCUCGGgGaCG- -5' |
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13345 | 5' | -60.4 | NC_003409.1 | + | 125759 | 0.94 | 0.010261 |
Target: 5'- aGGAGCCACAGCAGCAGGAGCCaCaGCa -3' miRNA: 3'- -CCUCGGUGUCGUCGUCCUCGGgGaCG- -5' |
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13345 | 5' | -60.4 | NC_003409.1 | + | 125789 | 0.94 | 0.010261 |
Target: 5'- aGGAGCCACAGCAGCAGGAGCCaCaGCa -3' miRNA: 3'- -CCUCGGUGUCGUCGUCCUCGGgGaCG- -5' |
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13345 | 5' | -60.4 | NC_003409.1 | + | 125564 | 0.93 | 0.013118 |
Target: 5'- gGGAGCCACAGCAGCGGGAGCCaCaGCa -3' miRNA: 3'- -CCUCGGUGUCGUCGUCCUCGGgGaCG- -5' |
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13345 | 5' | -60.4 | NC_003409.1 | + | 125594 | 0.93 | 0.013118 |
Target: 5'- gGGAGCCACAGCAGCGGGAGCCaCaGCa -3' miRNA: 3'- -CCUCGGUGUCGUCGUCCUCGGgGaCG- -5' |
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13345 | 5' | -60.4 | NC_003409.1 | + | 125624 | 0.93 | 0.013118 |
Target: 5'- gGGAGCCACAGCAGCGGGAGCCaCaGCa -3' miRNA: 3'- -CCUCGGUGUCGUCGUCCUCGGgGaCG- -5' |
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13345 | 5' | -60.4 | NC_003409.1 | + | 24261 | 0.88 | 0.030449 |
Target: 5'- aGGAGCCcCGGCAGCaccccAGGAGCCCCgGCa -3' miRNA: 3'- -CCUCGGuGUCGUCG-----UCCUCGGGGaCG- -5' |
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13345 | 5' | -60.4 | NC_003409.1 | + | 24301 | 0.88 | 0.030449 |
Target: 5'- aGGAGCCcCGGCAGCaccccAGGAGCCCCgGCa -3' miRNA: 3'- -CCUCGGuGUCGUCG-----UCCUCGGGGaCG- -5' |
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13345 | 5' | -60.4 | NC_003409.1 | + | 24541 | 0.88 | 0.030449 |
Target: 5'- aGGAGCCcCGGCAGCaccccAGGAGCCCCgGCa -3' miRNA: 3'- -CCUCGGuGUCGUCG-----UCCUCGGGGaCG- -5' |
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13345 | 5' | -60.4 | NC_003409.1 | + | 24461 | 0.88 | 0.030449 |
Target: 5'- aGGAGCCcCGGCAGCaccccAGGAGCCCCgGCa -3' miRNA: 3'- -CCUCGGuGUCGUCG-----UCCUCGGGGaCG- -5' |
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13345 | 5' | -60.4 | NC_003409.1 | + | 24421 | 0.88 | 0.030449 |
Target: 5'- aGGAGCCcCGGCAGCaccccAGGAGCCCCgGCa -3' miRNA: 3'- -CCUCGGuGUCGUCG-----UCCUCGGGGaCG- -5' |
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13345 | 5' | -60.4 | NC_003409.1 | + | 24501 | 0.88 | 0.030449 |
Target: 5'- aGGAGCCcCGGCAGCaccccAGGAGCCCCgGCa -3' miRNA: 3'- -CCUCGGuGUCGUCG-----UCCUCGGGGaCG- -5' |
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13345 | 5' | -60.4 | NC_003409.1 | + | 24381 | 0.88 | 0.030449 |
Target: 5'- aGGAGCCcCGGCAGCaccccAGGAGCCCCgGCa -3' miRNA: 3'- -CCUCGGuGUCGUCG-----UCCUCGGGGaCG- -5' |
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13345 | 5' | -60.4 | NC_003409.1 | + | 24341 | 0.88 | 0.030449 |
Target: 5'- aGGAGCCcCGGCAGCaccccAGGAGCCCCgGCa -3' miRNA: 3'- -CCUCGGuGUCGUCG-----UCCUCGGGGaCG- -5' |
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13345 | 5' | -60.4 | NC_003409.1 | + | 125975 | 0.83 | 0.061175 |
Target: 5'- aGGAGCCACAaCAGCAGGAGCCaCaGCa -3' miRNA: 3'- -CCUCGGUGUcGUCGUCCUCGGgGaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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