Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13347 | 3' | -49.7 | NC_003409.1 | + | 58544 | 0.66 | 0.994775 |
Target: 5'- cCGAGGCgAGgAAugCCGCUaucuaGGCCa -3' miRNA: 3'- -GUUCCGgUCgUUugGGUGAaa---UUGGa -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 80659 | 0.66 | 0.994775 |
Target: 5'- ---uGCCAGCGAACUCGUUUUGcaACCUc -3' miRNA: 3'- guucCGGUCGUUUGGGUGAAAU--UGGA- -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 55425 | 0.66 | 0.993998 |
Target: 5'- -cGGGUCAGgGGACCCACguggguggaauCCUa -3' miRNA: 3'- guUCCGGUCgUUUGGGUGaaauu------GGA- -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 79015 | 0.66 | 0.992925 |
Target: 5'- cCAAGGCCAGCAuuguguUCCACac-GACg- -3' miRNA: 3'- -GUUCCGGUCGUuu----GGGUGaaaUUGga -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 107975 | 0.66 | 0.992925 |
Target: 5'- gCAGGGagcuCCAGgGGcguGCCCACcgUGGCCUg -3' miRNA: 3'- -GUUCC----GGUCgUU---UGGGUGaaAUUGGA- -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 16780 | 0.66 | 0.992925 |
Target: 5'- gCGGGGCCAGCGuaauuuuuGGUCCGCUgugaUGACUg -3' miRNA: 3'- -GUUCCGGUCGU--------UUGGGUGAa---AUUGGa -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 75102 | 0.66 | 0.992925 |
Target: 5'- gGGGGCUGGC-AACCUACguaggUUGACa- -3' miRNA: 3'- gUUCCGGUCGuUUGGGUGa----AAUUGga -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 85885 | 0.66 | 0.992925 |
Target: 5'- --uGGuCCAGCGGAUCCGCggUGAUa- -3' miRNA: 3'- guuCC-GGUCGUUUGGGUGaaAUUGga -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 123274 | 0.66 | 0.991821 |
Target: 5'- --uGGCCAGUAAGCUCAga--AGCCUc -3' miRNA: 3'- guuCCGGUCGUUUGGGUgaaaUUGGA- -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 68248 | 0.66 | 0.991821 |
Target: 5'- --uGGCCAGaCGGGCCCAUacgcccaAACCg -3' miRNA: 3'- guuCCGGUC-GUUUGGGUGaaa----UUGGa -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 51887 | 0.66 | 0.991821 |
Target: 5'- gCAGGGUCAGCGGagaccGCgCCACUc--ACCa -3' miRNA: 3'- -GUUCCGGUCGUU-----UG-GGUGAaauUGGa -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 108405 | 0.66 | 0.991703 |
Target: 5'- aCGAGGUgaaaaagCAGCGAGCaaaCACUgaGACCg -3' miRNA: 3'- -GUUCCG-------GUCGUUUGg--GUGAaaUUGGa -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 32288 | 0.67 | 0.990585 |
Target: 5'- -cAGGCUGGCGGAcaccuCCCACg-UGGCCa -3' miRNA: 3'- guUCCGGUCGUUU-----GGGUGaaAUUGGa -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 68792 | 0.67 | 0.990585 |
Target: 5'- cCAGGGCU-GUAA--UCACUUUAACCUa -3' miRNA: 3'- -GUUCCGGuCGUUugGGUGAAAUUGGA- -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 41886 | 0.67 | 0.990321 |
Target: 5'- -uAGaGCCAGCugaAAGCCCACcagaucccgucgUUAACCUu -3' miRNA: 3'- guUC-CGGUCG---UUUGGGUGa-----------AAUUGGA- -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 28614 | 0.67 | 0.989206 |
Target: 5'- aGGGGCCAGCuuGAgUCAgUUUAGCaCUg -3' miRNA: 3'- gUUCCGGUCGu-UUgGGUgAAAUUG-GA- -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 133101 | 0.67 | 0.989206 |
Target: 5'- aUAGGGCCcuuGGCAAG-CCGCUg-GACCa -3' miRNA: 3'- -GUUCCGG---UCGUUUgGGUGAaaUUGGa -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 108636 | 0.67 | 0.987676 |
Target: 5'- --uGGCCGGcCAGGCCCAgga-GACCa -3' miRNA: 3'- guuCCGGUC-GUUUGGGUgaaaUUGGa -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 82017 | 0.67 | 0.987676 |
Target: 5'- --uGGCCAGU---CCCACUgguACCa -3' miRNA: 3'- guuCCGGUCGuuuGGGUGAaauUGGa -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 121287 | 0.67 | 0.987676 |
Target: 5'- ---uGCCGGuCAAGCCCGCUcauaaGACCa -3' miRNA: 3'- guucCGGUC-GUUUGGGUGAaa---UUGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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