Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13347 | 3' | -49.7 | NC_003409.1 | + | 130947 | 0.67 | 0.985982 |
Target: 5'- cCAGGGCCaccAGCAgcuggaAGCCCACcuc-GCCa -3' miRNA: 3'- -GUUCCGG---UCGU------UUGGGUGaaauUGGa -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 9681 | 0.67 | 0.985982 |
Target: 5'- aCGAGGaCAGCu--UCCACUUUGugGCCa -3' miRNA: 3'- -GUUCCgGUCGuuuGGGUGAAAU--UGGa -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 46149 | 0.67 | 0.984117 |
Target: 5'- -cGGGCguGCAAACCgGCUc--ACCg -3' miRNA: 3'- guUCCGguCGUUUGGgUGAaauUGGa -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 36275 | 0.67 | 0.984117 |
Target: 5'- gUAAGGCgGG-AGACCCGCUgacgucuGCCa -3' miRNA: 3'- -GUUCCGgUCgUUUGGGUGAaau----UGGa -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 16867 | 0.68 | 0.982068 |
Target: 5'- cCAAGGCCcgagguuuacGCAGACUgACUcgcUUAACCa -3' miRNA: 3'- -GUUCCGGu---------CGUUUGGgUGA---AAUUGGa -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 56608 | 0.68 | 0.982068 |
Target: 5'- -uAGGCCGGUGAACUccgccgccaugaCACUcaggUUGACCUg -3' miRNA: 3'- guUCCGGUCGUUUGG------------GUGA----AAUUGGA- -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 54958 | 0.68 | 0.977384 |
Target: 5'- gCAAGGCCGGCcGGCC-ACUgcagaUUGGCUg -3' miRNA: 3'- -GUUCCGGUCGuUUGGgUGA-----AAUUGGa -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 92368 | 0.68 | 0.97473 |
Target: 5'- aGGGGCacaAGCuugucACCCACUUuguaaaUAGCCUg -3' miRNA: 3'- gUUCCGg--UCGuu---UGGGUGAA------AUUGGA- -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 54784 | 0.68 | 0.97473 |
Target: 5'- cCGAGGuCCAGCcAAUCUGCagUGGCCg -3' miRNA: 3'- -GUUCC-GGUCGuUUGGGUGaaAUUGGa -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 128235 | 0.69 | 0.968755 |
Target: 5'- uGAGGgCAGCAGAgcCCCGCaugGGCCc -3' miRNA: 3'- gUUCCgGUCGUUU--GGGUGaaaUUGGa -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 77259 | 0.69 | 0.968755 |
Target: 5'- aCAuGGCCgcgcccaggGGCAGACCCAaaaagGACCUu -3' miRNA: 3'- -GUuCCGG---------UCGUUUGGGUgaaa-UUGGA- -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 3397 | 0.69 | 0.965417 |
Target: 5'- gGGGGCC-GCAGACCCAauaUUUu-CCUc -3' miRNA: 3'- gUUCCGGuCGUUUGGGUg--AAAuuGGA- -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 91714 | 0.69 | 0.965417 |
Target: 5'- --uGGCCAcuccCAAGCCCACaugGGCCUa -3' miRNA: 3'- guuCCGGUc---GUUUGGGUGaaaUUGGA- -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 89988 | 0.69 | 0.953921 |
Target: 5'- aCAGGGCCAGgAgacguuAACCUGCUggcGGCCg -3' miRNA: 3'- -GUUCCGGUCgU------UUGGGUGAaa-UUGGa -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 75371 | 0.7 | 0.940089 |
Target: 5'- -cAGGCacggGGCGAccugcGCCCugUUUGGCCUu -3' miRNA: 3'- guUCCGg---UCGUU-----UGGGugAAAUUGGA- -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 46757 | 0.7 | 0.929522 |
Target: 5'- gGGGGCCccAGCAAGCCUggcagaauACUcaUUAACCa -3' miRNA: 3'- gUUCCGG--UCGUUUGGG--------UGA--AAUUGGa -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 81875 | 0.72 | 0.884009 |
Target: 5'- --uGGCCAGUuaauCCCACUauaUAACCUg -3' miRNA: 3'- guuCCGGUCGuuu-GGGUGAa--AUUGGA- -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 108750 | 0.72 | 0.86061 |
Target: 5'- gGAGGCCGGCcuGCuCCGCUUccuguACCa -3' miRNA: 3'- gUUCCGGUCGuuUG-GGUGAAau---UGGa -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 105745 | 0.74 | 0.80769 |
Target: 5'- aCAGGGCCGGUugaagGAGCCCACguucucccGCCa -3' miRNA: 3'- -GUUCCGGUCG-----UUUGGGUGaaau----UGGa -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 110990 | 0.79 | 0.508828 |
Target: 5'- gAAGGCCGGCGcccucccgacacgcAACCCgucACUUUAACCUu -3' miRNA: 3'- gUUCCGGUCGU--------------UUGGG---UGAAAUUGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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