miRNA display CGI


Results 41 - 53 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13351 3' -62.1 NC_003409.1 + 107885 0.67 0.504651
Target:  5'- uUGUC-GGCCAGCgcucGCaCCAGCGgCAGc -3'
miRNA:   3'- -ACGGuCCGGUCGa---UGcGGUCGCgGUC- -5'
13351 3' -62.1 NC_003409.1 + 131235 1.08 0.000619
Target:  5'- cUGCCAGGCCAGCUACGCCAGCGCCAGg -3'
miRNA:   3'- -ACGGUCCGGUCGAUGCGGUCGCGGUC- -5'
13351 3' -62.1 NC_003409.1 + 33273 0.75 0.172058
Target:  5'- aGgUAGGCCAGCUGCGCUucGGacggaGCCGGa -3'
miRNA:   3'- aCgGUCCGGUCGAUGCGG--UCg----CGGUC- -5'
13351 3' -62.1 NC_003409.1 + 109538 0.74 0.18995
Target:  5'- gGUCAGGUCGcGCgGgGCCAGCGCCAc -3'
miRNA:   3'- aCGGUCCGGU-CGaUgCGGUCGCGGUc -5'
13351 3' -62.1 NC_003409.1 + 112155 0.72 0.241935
Target:  5'- gGCCAGGCCcugcauccGGCaccACGCCcgGGgGCCAGg -3'
miRNA:   3'- aCGGUCCGG--------UCGa--UGCGG--UCgCGGUC- -5'
13351 3' -62.1 NC_003409.1 + 77617 0.74 0.194672
Target:  5'- -cCCAGuaCGGCUGgGCuCAGCGCCAGg -3'
miRNA:   3'- acGGUCcgGUCGAUgCG-GUCGCGGUC- -5'
13351 3' -62.1 NC_003409.1 + 74072 0.71 0.285008
Target:  5'- cGCCcgAGGCUucuGGUUGgGCgAGCGCCGGg -3'
miRNA:   3'- aCGG--UCCGG---UCGAUgCGgUCGCGGUC- -5'
13351 3' -62.1 NC_003409.1 + 51981 0.71 0.298379
Target:  5'- gUGCCGGGuCCGGCguaGCaC-GCGCCAGc -3'
miRNA:   3'- -ACGGUCC-GGUCGaugCG-GuCGCGGUC- -5'
13351 3' -62.1 NC_003409.1 + 84569 0.71 0.319339
Target:  5'- uUGCCAGGCgAGauuguaACGCCcGUGCCAu -3'
miRNA:   3'- -ACGGUCCGgUCga----UGCGGuCGCGGUc -5'
13351 3' -62.1 NC_003409.1 + 132485 0.68 0.422531
Target:  5'- gGCCcuGCCccaggAGCUGCuuCCAGUGCCAGc -3'
miRNA:   3'- aCGGucCGG-----UCGAUGc-GGUCGCGGUC- -5'
13351 3' -62.1 NC_003409.1 + 108910 0.68 0.458079
Target:  5'- aGCUcGGCCAGCUuuuccugcAgGCCAGCuaGCUGGg -3'
miRNA:   3'- aCGGuCCGGUCGA--------UgCGGUCG--CGGUC- -5'
13351 3' -62.1 NC_003409.1 + 27859 0.67 0.495165
Target:  5'- aGCCcacaaAGGCgccaCAGCgACGCCGGCG-CAGg -3'
miRNA:   3'- aCGG-----UCCG----GUCGaUGCGGUCGCgGUC- -5'
13351 3' -62.1 NC_003409.1 + 88036 0.66 0.592915
Target:  5'- gUGUCAGGggucuCCGGCguCGCaCAGaCGCCGGg -3'
miRNA:   3'- -ACGGUCC-----GGUCGauGCG-GUC-GCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.