miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13351 3' -62.1 NC_003409.1 + 60138 0.7 0.35668
Target:  5'- cGCCAGGCgGcGCUGCGgCGGgagaGCCAa -3'
miRNA:   3'- aCGGUCCGgU-CGAUGCgGUCg---CGGUc -5'
13351 3' -62.1 NC_003409.1 + 73884 0.66 0.533554
Target:  5'- cUGCC-GGCCAGC-GCGuuccucCCGGCGCUc- -3'
miRNA:   3'- -ACGGuCCGGUCGaUGC------GGUCGCGGuc -5'
13351 3' -62.1 NC_003409.1 + 43622 0.71 0.278502
Target:  5'- aUGuCCGGGCCcgcGGcCUACGCCAGCuacguuGUCAGg -3'
miRNA:   3'- -AC-GGUCCGG---UC-GAUGCGGUCG------CGGUC- -5'
13351 3' -62.1 NC_003409.1 + 86430 0.69 0.413048
Target:  5'- --aCAGGCCAGCUAcauaacauugccuCGCCcGCGUCAc -3'
miRNA:   3'- acgGUCCGGUCGAU-------------GCGGuCGCGGUc -5'
13351 3' -62.1 NC_003409.1 + 27678 0.67 0.476443
Target:  5'- aGUCGGuGCgGcCUGCGCCGGCGUCGc -3'
miRNA:   3'- aCGGUC-CGgUcGAUGCGGUCGCGGUc -5'
13351 3' -62.1 NC_003409.1 + 120212 0.66 0.533554
Target:  5'- cGuCCAGG-CGGCUGgcacacgggcCGUgAGCGCCAGc -3'
miRNA:   3'- aC-GGUCCgGUCGAU----------GCGgUCGCGGUC- -5'
13351 3' -62.1 NC_003409.1 + 69039 0.7 0.341383
Target:  5'- cGCCAGGCCaguAGCUugGCCcuuGUGguaCGGg -3'
miRNA:   3'- aCGGUCCGG---UCGAugCGGu--CGCg--GUC- -5'
13351 3' -62.1 NC_003409.1 + 108997 0.68 0.458079
Target:  5'- cGCCcGGCCuGCgucccaGCCGGCgGCCAc -3'
miRNA:   3'- aCGGuCCGGuCGaug---CGGUCG-CGGUc -5'
13351 3' -62.1 NC_003409.1 + 108447 0.68 0.44904
Target:  5'- aGCUagAGGCCgcGGCUACGCaCGGCgacgacGCUAGa -3'
miRNA:   3'- aCGG--UCCGG--UCGAUGCG-GUCG------CGGUC- -5'
13351 3' -62.1 NC_003409.1 + 107885 0.67 0.504651
Target:  5'- uUGUC-GGCCAGCgcucGCaCCAGCGgCAGc -3'
miRNA:   3'- -ACGGuCCGGUCGa---UGcGGUCGCgGUC- -5'
13351 3' -62.1 NC_003409.1 + 31672 0.66 0.582916
Target:  5'- gGCCAGGCCuaauGggGUGUgGGgGCCAGa -3'
miRNA:   3'- aCGGUCCGGu---CgaUGCGgUCgCGGUC- -5'
13351 3' -62.1 NC_003409.1 + 109538 0.74 0.18995
Target:  5'- gGUCAGGUCGcGCgGgGCCAGCGCCAc -3'
miRNA:   3'- aCGGUCCGGU-CGaUgCGGUCGCGGUc -5'
13351 3' -62.1 NC_003409.1 + 109096 0.66 0.553148
Target:  5'- -cCCGGaGCCGGCUGCGUCuG-GCCGa -3'
miRNA:   3'- acGGUC-CGGUCGAUGCGGuCgCGGUc -5'
13351 3' -62.1 NC_003409.1 + 33273 0.75 0.172058
Target:  5'- aGgUAGGCCAGCUGCGCUucGGacggaGCCGGa -3'
miRNA:   3'- aCgGUCCGGUCGAUGCGG--UCg----CGGUC- -5'
13351 3' -62.1 NC_003409.1 + 119967 0.66 0.543322
Target:  5'- aGCaCGcGCgCGGCgcccACGCCGGCGCCuGg -3'
miRNA:   3'- aCG-GUcCG-GUCGa---UGCGGUCGCGGuC- -5'
13351 3' -62.1 NC_003409.1 + 131235 1.08 0.000619
Target:  5'- cUGCCAGGCCAGCUACGCCAGCGCCAGg -3'
miRNA:   3'- -ACGGUCCGGUCGAUGCGGUCGCGGUC- -5'
13351 3' -62.1 NC_003409.1 + 108910 0.68 0.458079
Target:  5'- aGCUcGGCCAGCUuuuccugcAgGCCAGCuaGCUGGg -3'
miRNA:   3'- aCGGuCCGGUCGA--------UgCGGUCG--CGGUC- -5'
13351 3' -62.1 NC_003409.1 + 77617 0.74 0.194672
Target:  5'- -cCCAGuaCGGCUGgGCuCAGCGCCAGg -3'
miRNA:   3'- acGGUCcgGUCGAUgCG-GUCGCGGUC- -5'
13351 3' -62.1 NC_003409.1 + 27859 0.67 0.495165
Target:  5'- aGCCcacaaAGGCgccaCAGCgACGCCGGCG-CAGg -3'
miRNA:   3'- aCGG-----UCCG----GUCGaUGCGGUCGCgGUC- -5'
13351 3' -62.1 NC_003409.1 + 131445 0.67 0.52385
Target:  5'- gUGCCuugGGaGUCAGCUGCGCCuguuuucGUGCCc- -3'
miRNA:   3'- -ACGG---UC-CGGUCGAUGCGGu------CGCGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.