Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13351 | 3' | -62.1 | NC_003409.1 | + | 133020 | 0.8 | 0.073659 |
Target: 5'- -uCCAGGCCGGUccgcgGCGCCAGCGCCu- -3' miRNA: 3'- acGGUCCGGUCGa----UGCGGUCGCGGuc -5' |
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13351 | 3' | -62.1 | NC_003409.1 | + | 69039 | 0.7 | 0.341383 |
Target: 5'- cGCCAGGCCaguAGCUugGCCcuuGUGguaCGGg -3' miRNA: 3'- aCGGUCCGG---UCGAugCGGu--CGCg--GUC- -5' |
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13351 | 3' | -62.1 | NC_003409.1 | + | 60138 | 0.7 | 0.35668 |
Target: 5'- cGCCAGGCgGcGCUGCGgCGGgagaGCCAa -3' miRNA: 3'- aCGGUCCGgU-CGAUGCgGUCg---CGGUc -5' |
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13351 | 3' | -62.1 | NC_003409.1 | + | 46599 | 0.66 | 0.543322 |
Target: 5'- cUGCCAGGCUuGCUgGgGCCccCGCCAc -3' miRNA: 3'- -ACGGUCCGGuCGA-UgCGGucGCGGUc -5' |
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13351 | 3' | -62.1 | NC_003409.1 | + | 118418 | 0.74 | 0.180808 |
Target: 5'- cGCCGGGUUccugGGgUGCGCC-GCGCCGGg -3' miRNA: 3'- aCGGUCCGG----UCgAUGCGGuCGCGGUC- -5' |
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13351 | 3' | -62.1 | NC_003409.1 | + | 119796 | 0.74 | 0.199496 |
Target: 5'- gUGCCAGgcGCCGGCguggGCGCCGcGCGCguGc -3' miRNA: 3'- -ACGGUC--CGGUCGa---UGCGGU-CGCGguC- -5' |
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13351 | 3' | -62.1 | NC_003409.1 | + | 109926 | 0.73 | 0.214596 |
Target: 5'- gGCCAGGCgCAGgaACGCUcuggcGGCGCUGGc -3' miRNA: 3'- aCGGUCCG-GUCgaUGCGG-----UCGCGGUC- -5' |
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13351 | 3' | -62.1 | NC_003409.1 | + | 38265 | 0.73 | 0.214596 |
Target: 5'- gGCCAuGGuCCAGCUugGCGCCcgugauGGCGCCGu -3' miRNA: 3'- aCGGU-CC-GGUCGA--UGCGG------UCGCGGUc -5' |
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13351 | 3' | -62.1 | NC_003409.1 | + | 43622 | 0.71 | 0.278502 |
Target: 5'- aUGuCCGGGCCcgcGGcCUACGCCAGCuacguuGUCAGg -3' miRNA: 3'- -AC-GGUCCGG---UC-GAUGCGGUCG------CGGUC- -5' |
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13351 | 3' | -62.1 | NC_003409.1 | + | 105369 | 0.7 | 0.333914 |
Target: 5'- aUGC--GGaCAGgUAUGCCAGCGCCAGu -3' miRNA: 3'- -ACGguCCgGUCgAUGCGGUCGCGGUC- -5' |
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13351 | 3' | -62.1 | NC_003409.1 | + | 113415 | 0.71 | 0.298379 |
Target: 5'- aGCCAGcGCgcaacaCGGCgauCGCCuGCGCCAGc -3' miRNA: 3'- aCGGUC-CG------GUCGau-GCGGuCGCGGUC- -5' |
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13351 | 3' | -62.1 | NC_003409.1 | + | 45734 | 0.72 | 0.259694 |
Target: 5'- uUGUCAGGCCAcCccggGCGCCauuAGCGCCAu -3' miRNA: 3'- -ACGGUCCGGUcGa---UGCGG---UCGCGGUc -5' |
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13351 | 3' | -62.1 | NC_003409.1 | + | 90139 | 0.77 | 0.117707 |
Target: 5'- cGCCAacaacuGGCCGGCgucuggACGCCGGCGgCAGu -3' miRNA: 3'- aCGGU------CCGGUCGa-----UGCGGUCGCgGUC- -5' |
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13351 | 3' | -62.1 | NC_003409.1 | + | 25563 | 0.71 | 0.305245 |
Target: 5'- gGCaCAGGCCAGaggguaaagccCUACGUguGCGCgGGg -3' miRNA: 3'- aCG-GUCCGGUC-----------GAUGCGguCGCGgUC- -5' |
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13351 | 3' | -62.1 | NC_003409.1 | + | 118326 | 0.74 | 0.180808 |
Target: 5'- cGCCGGGUUccugGGgUGCGCC-GCGCCGGg -3' miRNA: 3'- aCGGUCCGG----UCgAUGCGGuCGCGGUC- -5' |
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13351 | 3' | -62.1 | NC_003409.1 | + | 33313 | 0.73 | 0.225199 |
Target: 5'- uUGCCAGGCggagGGCUGuucuCGCCuggagcAGCGCCAGu -3' miRNA: 3'- -ACGGUCCGg---UCGAU----GCGG------UCGCGGUC- -5' |
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13351 | 3' | -62.1 | NC_003409.1 | + | 10011 | 0.71 | 0.305245 |
Target: 5'- aGCCAGuaCcGCUGCuGCCGGCGgCGGg -3' miRNA: 3'- aCGGUCcgGuCGAUG-CGGUCGCgGUC- -5' |
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13351 | 3' | -62.1 | NC_003409.1 | + | 116425 | 0.7 | 0.348972 |
Target: 5'- cGcCCGGGgC-GCgaaGCGCCAGCGUCAGc -3' miRNA: 3'- aC-GGUCCgGuCGa--UGCGGUCGCGGUC- -5' |
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13351 | 3' | -62.1 | NC_003409.1 | + | 118372 | 0.74 | 0.180808 |
Target: 5'- cGCCGGGUUccugGGgUGCGCC-GCGCCGGg -3' miRNA: 3'- aCGGUCCGG----UCgAUGCGGuCGCGGUC- -5' |
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13351 | 3' | -62.1 | NC_003409.1 | + | 37959 | 0.74 | 0.199496 |
Target: 5'- gGCCAGGCgCGcCUGCGCagcucaagaggCGGCGCCGGa -3' miRNA: 3'- aCGGUCCG-GUcGAUGCG-----------GUCGCGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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