miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13351 3' -62.1 NC_003409.1 + 131235 1.08 0.000619
Target:  5'- cUGCCAGGCCAGCUACGCCAGCGCCAGg -3'
miRNA:   3'- -ACGGUCCGGUCGAUGCGGUCGCGGUC- -5'
13351 3' -62.1 NC_003409.1 + 133020 0.8 0.073659
Target:  5'- -uCCAGGCCGGUccgcgGCGCCAGCGCCu- -3'
miRNA:   3'- acGGUCCGGUCGa----UGCGGUCGCGGuc -5'
13351 3' -62.1 NC_003409.1 + 90139 0.77 0.117707
Target:  5'- cGCCAacaacuGGCCGGCgucuggACGCCGGCGgCAGu -3'
miRNA:   3'- aCGGU------CCGGUCGa-----UGCGGUCGCgGUC- -5'
13351 3' -62.1 NC_003409.1 + 33273 0.75 0.172058
Target:  5'- aGgUAGGCCAGCUGCGCUucGGacggaGCCGGa -3'
miRNA:   3'- aCgGUCCGGUCGAUGCGG--UCg----CGGUC- -5'
13351 3' -62.1 NC_003409.1 + 118326 0.74 0.180808
Target:  5'- cGCCGGGUUccugGGgUGCGCC-GCGCCGGg -3'
miRNA:   3'- aCGGUCCGG----UCgAUGCGGuCGCGGUC- -5'
13351 3' -62.1 NC_003409.1 + 118372 0.74 0.180808
Target:  5'- cGCCGGGUUccugGGgUGCGCC-GCGCCGGg -3'
miRNA:   3'- aCGGUCCGG----UCgAUGCGGuCGCGGUC- -5'
13351 3' -62.1 NC_003409.1 + 118418 0.74 0.180808
Target:  5'- cGCCGGGUUccugGGgUGCGCC-GCGCCGGg -3'
miRNA:   3'- aCGGUCCGG----UCgAUGCGGuCGCGGUC- -5'
13351 3' -62.1 NC_003409.1 + 109538 0.74 0.18995
Target:  5'- gGUCAGGUCGcGCgGgGCCAGCGCCAc -3'
miRNA:   3'- aCGGUCCGGU-CGaUgCGGUCGCGGUc -5'
13351 3' -62.1 NC_003409.1 + 77617 0.74 0.194672
Target:  5'- -cCCAGuaCGGCUGgGCuCAGCGCCAGg -3'
miRNA:   3'- acGGUCcgGUCGAUgCG-GUCGCGGUC- -5'
13351 3' -62.1 NC_003409.1 + 37959 0.74 0.199496
Target:  5'- gGCCAGGCgCGcCUGCGCagcucaagaggCGGCGCCGGa -3'
miRNA:   3'- aCGGUCCG-GUcGAUGCG-----------GUCGCGGUC- -5'
13351 3' -62.1 NC_003409.1 + 119796 0.74 0.199496
Target:  5'- gUGCCAGgcGCCGGCguggGCGCCGcGCGCguGc -3'
miRNA:   3'- -ACGGUC--CGGUCGa---UGCGGU-CGCGguC- -5'
13351 3' -62.1 NC_003409.1 + 109926 0.73 0.214596
Target:  5'- gGCCAGGCgCAGgaACGCUcuggcGGCGCUGGc -3'
miRNA:   3'- aCGGUCCG-GUCgaUGCGG-----UCGCGGUC- -5'
13351 3' -62.1 NC_003409.1 + 38265 0.73 0.214596
Target:  5'- gGCCAuGGuCCAGCUugGCGCCcgugauGGCGCCGu -3'
miRNA:   3'- aCGGU-CC-GGUCGA--UGCGG------UCGCGGUc -5'
13351 3' -62.1 NC_003409.1 + 33313 0.73 0.225199
Target:  5'- uUGCCAGGCggagGGCUGuucuCGCCuggagcAGCGCCAGu -3'
miRNA:   3'- -ACGGUCCGg---UCGAU----GCGG------UCGCGGUC- -5'
13351 3' -62.1 NC_003409.1 + 112155 0.72 0.241935
Target:  5'- gGCCAGGCCcugcauccGGCaccACGCCcgGGgGCCAGg -3'
miRNA:   3'- aCGGUCCGG--------UCGa--UGCGG--UCgCGGUC- -5'
13351 3' -62.1 NC_003409.1 + 45734 0.72 0.259694
Target:  5'- uUGUCAGGCCAcCccggGCGCCauuAGCGCCAu -3'
miRNA:   3'- -ACGGUCCGGUcGa---UGCGG---UCGCGGUc -5'
13351 3' -62.1 NC_003409.1 + 43622 0.71 0.278502
Target:  5'- aUGuCCGGGCCcgcGGcCUACGCCAGCuacguuGUCAGg -3'
miRNA:   3'- -AC-GGUCCGG---UC-GAUGCGGUCG------CGGUC- -5'
13351 3' -62.1 NC_003409.1 + 75668 0.71 0.278502
Target:  5'- gUGCCAGcaGCCAGCguCGCCAacggacGCGCCAc -3'
miRNA:   3'- -ACGGUC--CGGUCGauGCGGU------CGCGGUc -5'
13351 3' -62.1 NC_003409.1 + 74072 0.71 0.285008
Target:  5'- cGCCcgAGGCUucuGGUUGgGCgAGCGCCGGg -3'
miRNA:   3'- aCGG--UCCGG---UCGAUgCGgUCGCGGUC- -5'
13351 3' -62.1 NC_003409.1 + 51981 0.71 0.298379
Target:  5'- gUGCCGGGuCCGGCguaGCaC-GCGCCAGc -3'
miRNA:   3'- -ACGGUCC-GGUCGaugCG-GuCGCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.