Results 21 - 40 of 53 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13351 | 3' | -62.1 | NC_003409.1 | + | 113415 | 0.71 | 0.298379 |
Target: 5'- aGCCAGcGCgcaacaCGGCgauCGCCuGCGCCAGc -3' miRNA: 3'- aCGGUC-CG------GUCGau-GCGGuCGCGGUC- -5' |
|||||||
13351 | 3' | -62.1 | NC_003409.1 | + | 10011 | 0.71 | 0.305245 |
Target: 5'- aGCCAGuaCcGCUGCuGCCGGCGgCGGg -3' miRNA: 3'- aCGGUCcgGuCGAUG-CGGUCGCgGUC- -5' |
|||||||
13351 | 3' | -62.1 | NC_003409.1 | + | 25563 | 0.71 | 0.305245 |
Target: 5'- gGCaCAGGCCAGaggguaaagccCUACGUguGCGCgGGg -3' miRNA: 3'- aCG-GUCCGGUC-----------GAUGCGguCGCGgUC- -5' |
|||||||
13351 | 3' | -62.1 | NC_003409.1 | + | 84569 | 0.71 | 0.319339 |
Target: 5'- uUGCCAGGCgAGauuguaACGCCcGUGCCAu -3' miRNA: 3'- -ACGGUCCGgUCga----UGCGGuCGCGGUc -5' |
|||||||
13351 | 3' | -62.1 | NC_003409.1 | + | 105369 | 0.7 | 0.333914 |
Target: 5'- aUGC--GGaCAGgUAUGCCAGCGCCAGu -3' miRNA: 3'- -ACGguCCgGUCgAUGCGGUCGCGGUC- -5' |
|||||||
13351 | 3' | -62.1 | NC_003409.1 | + | 69039 | 0.7 | 0.341383 |
Target: 5'- cGCCAGGCCaguAGCUugGCCcuuGUGguaCGGg -3' miRNA: 3'- aCGGUCCGG---UCGAugCGGu--CGCg--GUC- -5' |
|||||||
13351 | 3' | -62.1 | NC_003409.1 | + | 116425 | 0.7 | 0.348972 |
Target: 5'- cGcCCGGGgC-GCgaaGCGCCAGCGUCAGc -3' miRNA: 3'- aC-GGUCCgGuCGa--UGCGGUCGCGGUC- -5' |
|||||||
13351 | 3' | -62.1 | NC_003409.1 | + | 60138 | 0.7 | 0.35668 |
Target: 5'- cGCCAGGCgGcGCUGCGgCGGgagaGCCAa -3' miRNA: 3'- aCGGUCCGgU-CGAUGCgGUCg---CGGUc -5' |
|||||||
13351 | 3' | -62.1 | NC_003409.1 | + | 86430 | 0.69 | 0.413048 |
Target: 5'- --aCAGGCCAGCUAcauaacauugccuCGCCcGCGUCAc -3' miRNA: 3'- acgGUCCGGUCGAU-------------GCGGuCGCGGUc -5' |
|||||||
13351 | 3' | -62.1 | NC_003409.1 | + | 132485 | 0.68 | 0.422531 |
Target: 5'- gGCCcuGCCccaggAGCUGCuuCCAGUGCCAGc -3' miRNA: 3'- aCGGucCGG-----UCGAUGc-GGUCGCGGUC- -5' |
|||||||
13351 | 3' | -62.1 | NC_003409.1 | + | 108447 | 0.68 | 0.44904 |
Target: 5'- aGCUagAGGCCgcGGCUACGCaCGGCgacgacGCUAGa -3' miRNA: 3'- aCGG--UCCGG--UCGAUGCG-GUCG------CGGUC- -5' |
|||||||
13351 | 3' | -62.1 | NC_003409.1 | + | 108997 | 0.68 | 0.458079 |
Target: 5'- cGCCcGGCCuGCgucccaGCCGGCgGCCAc -3' miRNA: 3'- aCGGuCCGGuCGaug---CGGUCG-CGGUc -5' |
|||||||
13351 | 3' | -62.1 | NC_003409.1 | + | 108910 | 0.68 | 0.458079 |
Target: 5'- aGCUcGGCCAGCUuuuccugcAgGCCAGCuaGCUGGg -3' miRNA: 3'- aCGGuCCGGUCGA--------UgCGGUCG--CGGUC- -5' |
|||||||
13351 | 3' | -62.1 | NC_003409.1 | + | 27678 | 0.67 | 0.476443 |
Target: 5'- aGUCGGuGCgGcCUGCGCCGGCGUCGc -3' miRNA: 3'- aCGGUC-CGgUcGAUGCGGUCGCGGUc -5' |
|||||||
13351 | 3' | -62.1 | NC_003409.1 | + | 51816 | 0.67 | 0.476443 |
Target: 5'- gGCUGGcGCguGCUACGCCGGaC-CCGGc -3' miRNA: 3'- aCGGUC-CGguCGAUGCGGUC-GcGGUC- -5' |
|||||||
13351 | 3' | -62.1 | NC_003409.1 | + | 20641 | 0.67 | 0.485761 |
Target: 5'- cGCCAGGCC----GCGCCcG-GCCAGg -3' miRNA: 3'- aCGGUCCGGucgaUGCGGuCgCGGUC- -5' |
|||||||
13351 | 3' | -62.1 | NC_003409.1 | + | 27859 | 0.67 | 0.495165 |
Target: 5'- aGCCcacaaAGGCgccaCAGCgACGCCGGCG-CAGg -3' miRNA: 3'- aCGG-----UCCG----GUCGaUGCGGUCGCgGUC- -5' |
|||||||
13351 | 3' | -62.1 | NC_003409.1 | + | 107885 | 0.67 | 0.504651 |
Target: 5'- uUGUC-GGCCAGCgcucGCaCCAGCGgCAGc -3' miRNA: 3'- -ACGGuCCGGUCGa---UGcGGUCGCgGUC- -5' |
|||||||
13351 | 3' | -62.1 | NC_003409.1 | + | 110039 | 0.67 | 0.52385 |
Target: 5'- gGCCGuagggguacgguGGCaguGUUGCGCCGGgCGCCAc -3' miRNA: 3'- aCGGU------------CCGgu-CGAUGCGGUC-GCGGUc -5' |
|||||||
13351 | 3' | -62.1 | NC_003409.1 | + | 131445 | 0.67 | 0.52385 |
Target: 5'- gUGCCuugGGaGUCAGCUGCGCCuguuuucGUGCCc- -3' miRNA: 3'- -ACGG---UC-CGGUCGAUGCGGu------CGCGGuc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home