miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13351 3' -62.1 NC_003409.1 + 74072 0.71 0.285008
Target:  5'- cGCCcgAGGCUucuGGUUGgGCgAGCGCCGGg -3'
miRNA:   3'- aCGG--UCCGG---UCGAUgCGgUCGCGGUC- -5'
13351 3' -62.1 NC_003409.1 + 75668 0.71 0.278502
Target:  5'- gUGCCAGcaGCCAGCguCGCCAacggacGCGCCAc -3'
miRNA:   3'- -ACGGUC--CGGUCGauGCGGU------CGCGGUc -5'
13351 3' -62.1 NC_003409.1 + 77617 0.74 0.194672
Target:  5'- -cCCAGuaCGGCUGgGCuCAGCGCCAGg -3'
miRNA:   3'- acGGUCcgGUCGAUgCG-GUCGCGGUC- -5'
13351 3' -62.1 NC_003409.1 + 84362 0.66 0.533554
Target:  5'- gGCCAGGUaUGGCUAC-CCAauGUGCCAa -3'
miRNA:   3'- aCGGUCCG-GUCGAUGcGGU--CGCGGUc -5'
13351 3' -62.1 NC_003409.1 + 84569 0.71 0.319339
Target:  5'- uUGCCAGGCgAGauuguaACGCCcGUGCCAu -3'
miRNA:   3'- -ACGGUCCGgUCga----UGCGGuCGCGGUc -5'
13351 3' -62.1 NC_003409.1 + 86430 0.69 0.413048
Target:  5'- --aCAGGCCAGCUAcauaacauugccuCGCCcGCGUCAc -3'
miRNA:   3'- acgGUCCGGUCGAU-------------GCGGuCGCGGUc -5'
13351 3' -62.1 NC_003409.1 + 88036 0.66 0.592915
Target:  5'- gUGUCAGGggucuCCGGCguCGCaCAGaCGCCGGg -3'
miRNA:   3'- -ACGGUCC-----GGUCGauGCG-GUC-GCGGUC- -5'
13351 3' -62.1 NC_003409.1 + 90139 0.77 0.117707
Target:  5'- cGCCAacaacuGGCCGGCgucuggACGCCGGCGgCAGu -3'
miRNA:   3'- aCGGU------CCGGUCGa-----UGCGGUCGCgGUC- -5'
13351 3' -62.1 NC_003409.1 + 93556 0.66 0.57295
Target:  5'- cGCCAGGaaacaGGCgGCGgCAGuCGCCAc -3'
miRNA:   3'- aCGGUCCgg---UCGaUGCgGUC-GCGGUc -5'
13351 3' -62.1 NC_003409.1 + 99657 0.66 0.543322
Target:  5'- cUGCgCAGcacGUguGCUGCGCCA-CGCCAa -3'
miRNA:   3'- -ACG-GUC---CGguCGAUGCGGUcGCGGUc -5'
13351 3' -62.1 NC_003409.1 + 105369 0.7 0.333914
Target:  5'- aUGC--GGaCAGgUAUGCCAGCGCCAGu -3'
miRNA:   3'- -ACGguCCgGUCgAUGCGGUCGCGGUC- -5'
13351 3' -62.1 NC_003409.1 + 107885 0.67 0.504651
Target:  5'- uUGUC-GGCCAGCgcucGCaCCAGCGgCAGc -3'
miRNA:   3'- -ACGGuCCGGUCGa---UGcGGUCGCgGUC- -5'
13351 3' -62.1 NC_003409.1 + 108447 0.68 0.44904
Target:  5'- aGCUagAGGCCgcGGCUACGCaCGGCgacgacGCUAGa -3'
miRNA:   3'- aCGG--UCCGG--UCGAUGCG-GUCG------CGGUC- -5'
13351 3' -62.1 NC_003409.1 + 108910 0.68 0.458079
Target:  5'- aGCUcGGCCAGCUuuuccugcAgGCCAGCuaGCUGGg -3'
miRNA:   3'- aCGGuCCGGUCGA--------UgCGGUCG--CGGUC- -5'
13351 3' -62.1 NC_003409.1 + 108997 0.68 0.458079
Target:  5'- cGCCcGGCCuGCgucccaGCCGGCgGCCAc -3'
miRNA:   3'- aCGGuCCGGuCGaug---CGGUCG-CGGUc -5'
13351 3' -62.1 NC_003409.1 + 109096 0.66 0.553148
Target:  5'- -cCCGGaGCCGGCUGCGUCuG-GCCGa -3'
miRNA:   3'- acGGUC-CGGUCGAUGCGGuCgCGGUc -5'
13351 3' -62.1 NC_003409.1 + 109538 0.74 0.18995
Target:  5'- gGUCAGGUCGcGCgGgGCCAGCGCCAc -3'
miRNA:   3'- aCGGUCCGGU-CGaUgCGGUCGCGGUc -5'
13351 3' -62.1 NC_003409.1 + 109926 0.73 0.214596
Target:  5'- gGCCAGGCgCAGgaACGCUcuggcGGCGCUGGc -3'
miRNA:   3'- aCGGUCCG-GUCgaUGCGG-----UCGCGGUC- -5'
13351 3' -62.1 NC_003409.1 + 110039 0.67 0.52385
Target:  5'- gGCCGuagggguacgguGGCaguGUUGCGCCGGgCGCCAc -3'
miRNA:   3'- aCGGU------------CCGgu-CGAUGCGGUC-GCGGUc -5'
13351 3' -62.1 NC_003409.1 + 110071 0.66 0.553148
Target:  5'- cGCCuGGCCgaccaGGCgcuCGCCGGUGgCAa -3'
miRNA:   3'- aCGGuCCGG-----UCGau-GCGGUCGCgGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.