miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13351 3' -62.1 NC_003409.1 + 10011 0.71 0.305245
Target:  5'- aGCCAGuaCcGCUGCuGCCGGCGgCGGg -3'
miRNA:   3'- aCGGUCcgGuCGAUG-CGGUCGCgGUC- -5'
13351 3' -62.1 NC_003409.1 + 20641 0.67 0.485761
Target:  5'- cGCCAGGCC----GCGCCcG-GCCAGg -3'
miRNA:   3'- aCGGUCCGGucgaUGCGGuCgCGGUC- -5'
13351 3' -62.1 NC_003409.1 + 22559 0.66 0.591914
Target:  5'- cUGCCAccaucauGGCCucggauuGUUGCGagaauucccuguCCAGUGCCAGa -3'
miRNA:   3'- -ACGGU-------CCGGu------CGAUGC------------GGUCGCGGUC- -5'
13351 3' -62.1 NC_003409.1 + 25563 0.71 0.305245
Target:  5'- gGCaCAGGCCAGaggguaaagccCUACGUguGCGCgGGg -3'
miRNA:   3'- aCG-GUCCGGUC-----------GAUGCGguCGCGgUC- -5'
13351 3' -62.1 NC_003409.1 + 27678 0.67 0.476443
Target:  5'- aGUCGGuGCgGcCUGCGCCGGCGUCGc -3'
miRNA:   3'- aCGGUC-CGgUcGAUGCGGUCGCGGUc -5'
13351 3' -62.1 NC_003409.1 + 27859 0.67 0.495165
Target:  5'- aGCCcacaaAGGCgccaCAGCgACGCCGGCG-CAGg -3'
miRNA:   3'- aCGG-----UCCG----GUCGaUGCGGUCGCgGUC- -5'
13351 3' -62.1 NC_003409.1 + 31672 0.66 0.582916
Target:  5'- gGCCAGGCCuaauGggGUGUgGGgGCCAGa -3'
miRNA:   3'- aCGGUCCGGu---CgaUGCGgUCgCGGUC- -5'
13351 3' -62.1 NC_003409.1 + 33273 0.75 0.172058
Target:  5'- aGgUAGGCCAGCUGCGCUucGGacggaGCCGGa -3'
miRNA:   3'- aCgGUCCGGUCGAUGCGG--UCg----CGGUC- -5'
13351 3' -62.1 NC_003409.1 + 33313 0.73 0.225199
Target:  5'- uUGCCAGGCggagGGCUGuucuCGCCuggagcAGCGCCAGu -3'
miRNA:   3'- -ACGGUCCGg---UCGAU----GCGG------UCGCGGUC- -5'
13351 3' -62.1 NC_003409.1 + 37959 0.74 0.199496
Target:  5'- gGCCAGGCgCGcCUGCGCagcucaagaggCGGCGCCGGa -3'
miRNA:   3'- aCGGUCCG-GUcGAUGCG-----------GUCGCGGUC- -5'
13351 3' -62.1 NC_003409.1 + 38265 0.73 0.214596
Target:  5'- gGCCAuGGuCCAGCUugGCGCCcgugauGGCGCCGu -3'
miRNA:   3'- aCGGU-CC-GGUCGA--UGCGG------UCGCGGUc -5'
13351 3' -62.1 NC_003409.1 + 43622 0.71 0.278502
Target:  5'- aUGuCCGGGCCcgcGGcCUACGCCAGCuacguuGUCAGg -3'
miRNA:   3'- -AC-GGUCCGG---UC-GAUGCGGUCG------CGGUC- -5'
13351 3' -62.1 NC_003409.1 + 45734 0.72 0.259694
Target:  5'- uUGUCAGGCCAcCccggGCGCCauuAGCGCCAu -3'
miRNA:   3'- -ACGGUCCGGUcGa---UGCGG---UCGCGGUc -5'
13351 3' -62.1 NC_003409.1 + 46599 0.66 0.543322
Target:  5'- cUGCCAGGCUuGCUgGgGCCccCGCCAc -3'
miRNA:   3'- -ACGGUCCGGuCGA-UgCGGucGCGGUc -5'
13351 3' -62.1 NC_003409.1 + 51816 0.67 0.476443
Target:  5'- gGCUGGcGCguGCUACGCCGGaC-CCGGc -3'
miRNA:   3'- aCGGUC-CGguCGAUGCGGUC-GcGGUC- -5'
13351 3' -62.1 NC_003409.1 + 51981 0.71 0.298379
Target:  5'- gUGCCGGGuCCGGCguaGCaC-GCGCCAGc -3'
miRNA:   3'- -ACGGUCC-GGUCGaugCG-GuCGCGGUC- -5'
13351 3' -62.1 NC_003409.1 + 53243 0.66 0.543322
Target:  5'- gGUCAGGUCAGgUACGUguucgcgcgaCGGCGgCGGa -3'
miRNA:   3'- aCGGUCCGGUCgAUGCG----------GUCGCgGUC- -5'
13351 3' -62.1 NC_003409.1 + 60138 0.7 0.35668
Target:  5'- cGCCAGGCgGcGCUGCGgCGGgagaGCCAa -3'
miRNA:   3'- aCGGUCCGgU-CGAUGCgGUCg---CGGUc -5'
13351 3' -62.1 NC_003409.1 + 69039 0.7 0.341383
Target:  5'- cGCCAGGCCaguAGCUugGCCcuuGUGguaCGGg -3'
miRNA:   3'- aCGGUCCGG---UCGAugCGGu--CGCg--GUC- -5'
13351 3' -62.1 NC_003409.1 + 73884 0.66 0.533554
Target:  5'- cUGCC-GGCCAGC-GCGuuccucCCGGCGCUc- -3'
miRNA:   3'- -ACGGuCCGGUCGaUGC------GGUCGCGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.