Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 13358 | 5' | -57.4 | NC_003409.1 | + | 96656 | 0.66 | 0.842073 |
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Target: 5'- uGCACGCCaaC-CCucaGUGUGCuGUCCa -3' miRNA: 3'- -UGUGCGGagGuGGuugCGCACG-CAGG- -5' |
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| 13358 | 5' | -57.4 | NC_003409.1 | + | 13700 | 0.66 | 0.842073 |
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Target: 5'- uAUugGCCUCCGCaggaGACcCGcuagGCGuUCCg -3' miRNA: 3'- -UGugCGGAGGUGg---UUGcGCa---CGC-AGG- -5' |
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| 13358 | 5' | -57.4 | NC_003409.1 | + | 42937 | 0.66 | 0.857758 |
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Target: 5'- gAC-CGCCcUCGCCGcCGCuUGCGUCa -3' miRNA: 3'- -UGuGCGGaGGUGGUuGCGcACGCAGg -5' |
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| 13358 | 5' | -57.4 | NC_003409.1 | + | 42836 | 0.66 | 0.857758 |
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Target: 5'- -aGCGCCUCC-CUGACGaCGa--GUCCg -3' miRNA: 3'- ugUGCGGAGGuGGUUGC-GCacgCAGG- -5' |
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| 13358 | 5' | -57.4 | NC_003409.1 | + | 45914 | 0.66 | 0.865303 |
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Target: 5'- uGCAUGCU--CACCAugGCGcuaaugGCGcCCg -3' miRNA: 3'- -UGUGCGGagGUGGUugCGCa-----CGCaGG- -5' |
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| 13358 | 5' | -57.4 | NC_003409.1 | + | 111905 | 0.66 | 0.865303 |
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Target: 5'- aAC-CGUCUCCGCCAgggACGCcgauaggGCGgCCa -3' miRNA: 3'- -UGuGCGGAGGUGGU---UGCGca-----CGCaGG- -5' |
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| 13358 | 5' | -57.4 | NC_003409.1 | + | 89129 | 0.66 | 0.865303 |
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Target: 5'- uCGCGcCCUCCAUCG-CGCcUGCGaauuuUCCc -3' miRNA: 3'- uGUGC-GGAGGUGGUuGCGcACGC-----AGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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