Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 13358 | 5' | -57.4 | NC_003409.1 | + | 34270 | 0.71 | 0.56388 |
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Target: 5'- gACGCGCCg-CugCAugGCGU-UGUCCg -3' miRNA: 3'- -UGUGCGGagGugGUugCGCAcGCAGG- -5' |
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| 13358 | 5' | -57.4 | NC_003409.1 | + | 113431 | 0.72 | 0.505074 |
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Target: 5'- gGCGauCGCCUgCGCCAGCGaCGgGCgGUCCa -3' miRNA: 3'- -UGU--GCGGAgGUGGUUGC-GCaCG-CAGG- -5' |
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| 13358 | 5' | -57.4 | NC_003409.1 | + | 79724 | 0.73 | 0.475727 |
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Target: 5'- cGCGCGCa-CCACCAaaucaggACGCGUGCacuuUCCa -3' miRNA: 3'- -UGUGCGgaGGUGGU-------UGCGCACGc---AGG- -5' |
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| 13358 | 5' | -57.4 | NC_003409.1 | + | 56135 | 0.73 | 0.449063 |
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Target: 5'- ---aGCCUCCACCuGACGauUGUGUCCu -3' miRNA: 3'- ugugCGGAGGUGG-UUGCgcACGCAGG- -5' |
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| 13358 | 5' | -57.4 | NC_003409.1 | + | 132965 | 0.75 | 0.37197 |
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Target: 5'- aGCGCGCCgCgCGCCuguGCGCGUGCcagguaacgGUCCu -3' miRNA: 3'- -UGUGCGGaG-GUGGu--UGCGCACG---------CAGG- -5' |
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| 13358 | 5' | -57.4 | NC_003409.1 | + | 97023 | 0.84 | 0.107789 |
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Target: 5'- gGCACGCCUCCGCCAgaaGCGUGCccCCu -3' miRNA: 3'- -UGUGCGGAGGUGGUug-CGCACGcaGG- -5' |
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| 13358 | 5' | -57.4 | NC_003409.1 | + | 134820 | 1.12 | 0.001348 |
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Target: 5'- aACACGCCUCCACCAACGCGUGCGUCCg -3' miRNA: 3'- -UGUGCGGAGGUGGUUGCGCACGCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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