miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13358 5' -57.4 NC_003409.1 + 41641 0.68 0.763107
Target:  5'- -aGCGUCgCCGCCAggagACGCG-GUGUCUc -3'
miRNA:   3'- ugUGCGGaGGUGGU----UGCGCaCGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 81363 0.68 0.763107
Target:  5'- gGCGCGCCUUUACgCuuCGCGaacUGC-UCCa -3'
miRNA:   3'- -UGUGCGGAGGUG-GuuGCGC---ACGcAGG- -5'
13358 5' -57.4 NC_003409.1 + 130864 0.68 0.753648
Target:  5'- gUugGUCUCCAgguuuaccgcCCAGCGCuggggugguGUGgGUCCg -3'
miRNA:   3'- uGugCGGAGGU----------GGUUGCG---------CACgCAGG- -5'
13358 5' -57.4 NC_003409.1 + 45684 0.68 0.753648
Target:  5'- aACAUaGUCUCCGCCGccuCGCGagaGCgGUCCg -3'
miRNA:   3'- -UGUG-CGGAGGUGGUu--GCGCa--CG-CAGG- -5'
13358 5' -57.4 NC_003409.1 + 26246 0.68 0.734423
Target:  5'- cUACGCCaCUGCguGCGCGUGCGg-- -3'
miRNA:   3'- uGUGCGGaGGUGguUGCGCACGCagg -5'
13358 5' -57.4 NC_003409.1 + 115148 0.68 0.734423
Target:  5'- uGCugGaCCUCgACCAugGCGgcaGCGgcagaCCu -3'
miRNA:   3'- -UGugC-GGAGgUGGUugCGCa--CGCa----GG- -5'
13358 5' -57.4 NC_003409.1 + 96407 0.68 0.71485
Target:  5'- -aACGUCUCCACUGccuuC-CGUGUGUCCc -3'
miRNA:   3'- ugUGCGGAGGUGGUu---GcGCACGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 110007 0.68 0.71485
Target:  5'- -gGCGCCaCCGCCucccgcCGCG-GCGUCUu -3'
miRNA:   3'- ugUGCGGaGGUGGuu----GCGCaCGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 55892 0.69 0.708921
Target:  5'- uCGCGCUUCagugCACCGugGgcccugacggcaugcUGUGCGUCCu -3'
miRNA:   3'- uGUGCGGAG----GUGGUugC---------------GCACGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 116306 0.69 0.704955
Target:  5'- cGCACcCCaUCCACCGAUGCcgaaaucaGUGUCCa -3'
miRNA:   3'- -UGUGcGG-AGGUGGUUGCGca------CGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 14900 0.69 0.684992
Target:  5'- cGCGCGUUgCCGCCuGugGCGUuuGCGUCg -3'
miRNA:   3'- -UGUGCGGaGGUGG-UugCGCA--CGCAGg -5'
13358 5' -57.4 NC_003409.1 + 91121 0.69 0.678967
Target:  5'- -gGCGCCUCCuguguGCCGAgGUaaaggaaugcuggugGUGCGUUCa -3'
miRNA:   3'- ugUGCGGAGG-----UGGUUgCG---------------CACGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 52503 0.69 0.673935
Target:  5'- gGCACGCCUCUAaaAAgUGCGauuuaacUGCGUCUg -3'
miRNA:   3'- -UGUGCGGAGGUggUU-GCGC-------ACGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 127942 0.69 0.664858
Target:  5'- cCGC-CCUCCACU-ACGCG-GCGcCCg -3'
miRNA:   3'- uGUGcGGAGGUGGuUGCGCaCGCaGG- -5'
13358 5' -57.4 NC_003409.1 + 86023 0.69 0.664858
Target:  5'- cGCACuGCCgCCACCc-CGCGgaagauugGUGUCCa -3'
miRNA:   3'- -UGUG-CGGaGGUGGuuGCGCa-------CGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 22224 0.7 0.654748
Target:  5'- -uGCuUCUCCAUCAgaagACGCGUGCG-CCg -3'
miRNA:   3'- ugUGcGGAGGUGGU----UGCGCACGCaGG- -5'
13358 5' -57.4 NC_003409.1 + 30651 0.7 0.624343
Target:  5'- ---aGCCUCCGCgAGCGCGaaaccacugGgGUCCg -3'
miRNA:   3'- ugugCGGAGGUGgUUGCGCa--------CgCAGG- -5'
13358 5' -57.4 NC_003409.1 + 59245 0.7 0.624343
Target:  5'- uACAUGCCUCUGgCGACGuCG-GCG-CCg -3'
miRNA:   3'- -UGUGCGGAGGUgGUUGC-GCaCGCaGG- -5'
13358 5' -57.4 NC_003409.1 + 117676 0.7 0.613196
Target:  5'- gUugGCCUCCAgCAaagcacauuuugcACGCaaaugGCGUCCg -3'
miRNA:   3'- uGugCGGAGGUgGU-------------UGCGca---CGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 105100 0.71 0.573878
Target:  5'- cCAUGUCUCCAUCGGCGCcu-UGUCCg -3'
miRNA:   3'- uGUGCGGAGGUGGUUGCGcacGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.