Results 21 - 40 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13358 | 5' | -57.4 | NC_003409.1 | + | 97023 | 0.84 | 0.107789 |
Target: 5'- gGCACGCCUCCGCCAgaaGCGUGCccCCu -3' miRNA: 3'- -UGUGCGGAGGUGGUug-CGCACGcaGG- -5' |
|||||||
13358 | 5' | -57.4 | NC_003409.1 | + | 134820 | 1.12 | 0.001348 |
Target: 5'- aACACGCCUCCACCAACGCGUGCGUCCg -3' miRNA: 3'- -UGUGCGGAGGUGGUUGCGCACGCAGG- -5' |
|||||||
13358 | 5' | -57.4 | NC_003409.1 | + | 96656 | 0.66 | 0.842073 |
Target: 5'- uGCACGCCaaC-CCucaGUGUGCuGUCCa -3' miRNA: 3'- -UGUGCGGagGuGGuugCGCACG-CAGG- -5' |
|||||||
13358 | 5' | -57.4 | NC_003409.1 | + | 56135 | 0.73 | 0.449063 |
Target: 5'- ---aGCCUCCACCuGACGauUGUGUCCu -3' miRNA: 3'- ugugCGGAGGUGG-UUGCgcACGCAGG- -5' |
|||||||
13358 | 5' | -57.4 | NC_003409.1 | + | 105100 | 0.71 | 0.573878 |
Target: 5'- cCAUGUCUCCAUCGGCGCcu-UGUCCg -3' miRNA: 3'- uGUGCGGAGGUGGUUGCGcacGCAGG- -5' |
|||||||
13358 | 5' | -57.4 | NC_003409.1 | + | 13700 | 0.66 | 0.842073 |
Target: 5'- uAUugGCCUCCGCaggaGACcCGcuagGCGuUCCg -3' miRNA: 3'- -UGugCGGAGGUGg---UUGcGCa---CGC-AGG- -5' |
|||||||
13358 | 5' | -57.4 | NC_003409.1 | + | 40700 | 0.66 | 0.833947 |
Target: 5'- cACugGCg-CCACCGAa-CGgccGCGUCCa -3' miRNA: 3'- -UGugCGgaGGUGGUUgcGCa--CGCAGG- -5' |
|||||||
13358 | 5' | -57.4 | NC_003409.1 | + | 109727 | 0.66 | 0.82564 |
Target: 5'- gACGCGCUUCUGgCGugGCGaagugGCGcaugUCCg -3' miRNA: 3'- -UGUGCGGAGGUgGUugCGCa----CGC----AGG- -5' |
|||||||
13358 | 5' | -57.4 | NC_003409.1 | + | 16986 | 0.67 | 0.799715 |
Target: 5'- -gGCGUUUCCA---AUGUGUGUGUCCg -3' miRNA: 3'- ugUGCGGAGGUgguUGCGCACGCAGG- -5' |
|||||||
13358 | 5' | -57.4 | NC_003409.1 | + | 83314 | 0.67 | 0.799715 |
Target: 5'- uACAUGCCUCUACUAA-GCG-GUuUCCc -3' miRNA: 3'- -UGUGCGGAGGUGGUUgCGCaCGcAGG- -5' |
|||||||
13358 | 5' | -57.4 | NC_003409.1 | + | 109619 | 0.67 | 0.790765 |
Target: 5'- gACAUGCgugcgCCGCCucCGCGUGCGa-- -3' miRNA: 3'- -UGUGCGga---GGUGGuuGCGCACGCagg -5' |
|||||||
13358 | 5' | -57.4 | NC_003409.1 | + | 45684 | 0.68 | 0.753648 |
Target: 5'- aACAUaGUCUCCGCCGccuCGCGagaGCgGUCCg -3' miRNA: 3'- -UGUG-CGGAGGUGGUu--GCGCa--CG-CAGG- -5' |
|||||||
13358 | 5' | -57.4 | NC_003409.1 | + | 110007 | 0.68 | 0.71485 |
Target: 5'- -gGCGCCaCCGCCucccgcCGCG-GCGUCUu -3' miRNA: 3'- ugUGCGGaGGUGGuu----GCGCaCGCAGG- -5' |
|||||||
13358 | 5' | -57.4 | NC_003409.1 | + | 55892 | 0.69 | 0.708921 |
Target: 5'- uCGCGCUUCagugCACCGugGgcccugacggcaugcUGUGCGUCCu -3' miRNA: 3'- uGUGCGGAG----GUGGUugC---------------GCACGCAGG- -5' |
|||||||
13358 | 5' | -57.4 | NC_003409.1 | + | 52503 | 0.69 | 0.673935 |
Target: 5'- gGCACGCCUCUAaaAAgUGCGauuuaacUGCGUCUg -3' miRNA: 3'- -UGUGCGGAGGUggUU-GCGC-------ACGCAGG- -5' |
|||||||
13358 | 5' | -57.4 | NC_003409.1 | + | 127942 | 0.69 | 0.664858 |
Target: 5'- cCGC-CCUCCACU-ACGCG-GCGcCCg -3' miRNA: 3'- uGUGcGGAGGUGGuUGCGCaCGCaGG- -5' |
|||||||
13358 | 5' | -57.4 | NC_003409.1 | + | 86023 | 0.69 | 0.664858 |
Target: 5'- cGCACuGCCgCCACCc-CGCGgaagauugGUGUCCa -3' miRNA: 3'- -UGUG-CGGaGGUGGuuGCGCa-------CGCAGG- -5' |
|||||||
13358 | 5' | -57.4 | NC_003409.1 | + | 30651 | 0.7 | 0.624343 |
Target: 5'- ---aGCCUCCGCgAGCGCGaaaccacugGgGUCCg -3' miRNA: 3'- ugugCGGAGGUGgUUGCGCa--------CgCAGG- -5' |
|||||||
13358 | 5' | -57.4 | NC_003409.1 | + | 59245 | 0.7 | 0.624343 |
Target: 5'- uACAUGCCUCUGgCGACGuCG-GCG-CCg -3' miRNA: 3'- -UGUGCGGAGGUgGUUGC-GCaCGCaGG- -5' |
|||||||
13358 | 5' | -57.4 | NC_003409.1 | + | 117676 | 0.7 | 0.613196 |
Target: 5'- gUugGCCUCCAgCAaagcacauuuugcACGCaaaugGCGUCCg -3' miRNA: 3'- uGugCGGAGGUgGU-------------UGCGca---CGCAGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home