miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13358 5' -57.4 NC_003409.1 + 55892 0.69 0.708921
Target:  5'- uCGCGCUUCagugCACCGugGgcccugacggcaugcUGUGCGUCCu -3'
miRNA:   3'- uGUGCGGAG----GUGGUugC---------------GCACGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 56135 0.73 0.449063
Target:  5'- ---aGCCUCCACCuGACGauUGUGUCCu -3'
miRNA:   3'- ugugCGGAGGUGG-UUGCgcACGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 59245 0.7 0.624343
Target:  5'- uACAUGCCUCUGgCGACGuCG-GCG-CCg -3'
miRNA:   3'- -UGUGCGGAGGUgGUUGC-GCaCGCaGG- -5'
13358 5' -57.4 NC_003409.1 + 79724 0.73 0.475727
Target:  5'- cGCGCGCa-CCACCAaaucaggACGCGUGCacuuUCCa -3'
miRNA:   3'- -UGUGCGgaGGUGGU-------UGCGCACGc---AGG- -5'
13358 5' -57.4 NC_003409.1 + 81363 0.68 0.763107
Target:  5'- gGCGCGCCUUUACgCuuCGCGaacUGC-UCCa -3'
miRNA:   3'- -UGUGCGGAGGUG-GuuGCGC---ACGcAGG- -5'
13358 5' -57.4 NC_003409.1 + 83314 0.67 0.799715
Target:  5'- uACAUGCCUCUACUAA-GCG-GUuUCCc -3'
miRNA:   3'- -UGUGCGGAGGUGGUUgCGCaCGcAGG- -5'
13358 5' -57.4 NC_003409.1 + 86023 0.69 0.664858
Target:  5'- cGCACuGCCgCCACCc-CGCGgaagauugGUGUCCa -3'
miRNA:   3'- -UGUG-CGGaGGUGGuuGCGCa-------CGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 87235 0.67 0.769661
Target:  5'- -aGCGCCUCCAcuagaccacggaauCCAAagcgGUGUGCGaacuUCCg -3'
miRNA:   3'- ugUGCGGAGGU--------------GGUUg---CGCACGC----AGG- -5'
13358 5' -57.4 NC_003409.1 + 89129 0.66 0.865303
Target:  5'- uCGCGcCCUCCAUCG-CGCcUGCGaauuuUCCc -3'
miRNA:   3'- uGUGC-GGAGGUGGUuGCGcACGC-----AGG- -5'
13358 5' -57.4 NC_003409.1 + 91121 0.69 0.678967
Target:  5'- -gGCGCCUCCuguguGCCGAgGUaaaggaaugcuggugGUGCGUUCa -3'
miRNA:   3'- ugUGCGGAGG-----UGGUUgCG---------------CACGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 95519 0.67 0.817161
Target:  5'- -aGCGCCUCUugUGAgGCcucuuuGUGCuGUCCu -3'
miRNA:   3'- ugUGCGGAGGugGUUgCG------CACG-CAGG- -5'
13358 5' -57.4 NC_003409.1 + 96407 0.68 0.71485
Target:  5'- -aACGUCUCCACUGccuuC-CGUGUGUCCc -3'
miRNA:   3'- ugUGCGGAGGUGGUu---GcGCACGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 96656 0.66 0.842073
Target:  5'- uGCACGCCaaC-CCucaGUGUGCuGUCCa -3'
miRNA:   3'- -UGUGCGGagGuGGuugCGCACG-CAGG- -5'
13358 5' -57.4 NC_003409.1 + 97023 0.84 0.107789
Target:  5'- gGCACGCCUCCGCCAgaaGCGUGCccCCu -3'
miRNA:   3'- -UGUGCGGAGGUGGUug-CGCACGcaGG- -5'
13358 5' -57.4 NC_003409.1 + 105100 0.71 0.573878
Target:  5'- cCAUGUCUCCAUCGGCGCcu-UGUCCg -3'
miRNA:   3'- uGUGCGGAGGUGGUUGCGcacGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 109619 0.67 0.790765
Target:  5'- gACAUGCgugcgCCGCCucCGCGUGCGa-- -3'
miRNA:   3'- -UGUGCGga---GGUGGuuGCGCACGCagg -5'
13358 5' -57.4 NC_003409.1 + 109727 0.66 0.82564
Target:  5'- gACGCGCUUCUGgCGugGCGaagugGCGcaugUCCg -3'
miRNA:   3'- -UGUGCGGAGGUgGUugCGCa----CGC----AGG- -5'
13358 5' -57.4 NC_003409.1 + 110007 0.68 0.71485
Target:  5'- -gGCGCCaCCGCCucccgcCGCG-GCGUCUu -3'
miRNA:   3'- ugUGCGGaGGUGGuu----GCGCaCGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 111905 0.66 0.865303
Target:  5'- aAC-CGUCUCCGCCAgggACGCcgauaggGCGgCCa -3'
miRNA:   3'- -UGuGCGGAGGUGGU---UGCGca-----CGCaGG- -5'
13358 5' -57.4 NC_003409.1 + 113431 0.72 0.505074
Target:  5'- gGCGauCGCCUgCGCCAGCGaCGgGCgGUCCa -3'
miRNA:   3'- -UGU--GCGGAgGUGGUUGC-GCaCG-CAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.