miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13358 5' -57.4 NC_003409.1 + 9602 0.67 0.808516
Target:  5'- -uGgGCCUCCgagagcaagACCAcgGC-CGUGUGUCCg -3'
miRNA:   3'- ugUgCGGAGG---------UGGU--UGcGCACGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 13700 0.66 0.842073
Target:  5'- uAUugGCCUCCGCaggaGACcCGcuagGCGuUCCg -3'
miRNA:   3'- -UGugCGGAGGUGg---UUGcGCa---CGC-AGG- -5'
13358 5' -57.4 NC_003409.1 + 14900 0.69 0.684992
Target:  5'- cGCGCGUUgCCGCCuGugGCGUuuGCGUCg -3'
miRNA:   3'- -UGUGCGGaGGUGG-UugCGCA--CGCAGg -5'
13358 5' -57.4 NC_003409.1 + 16986 0.67 0.799715
Target:  5'- -gGCGUUUCCA---AUGUGUGUGUCCg -3'
miRNA:   3'- ugUGCGGAGGUgguUGCGCACGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 22224 0.7 0.654748
Target:  5'- -uGCuUCUCCAUCAgaagACGCGUGCG-CCg -3'
miRNA:   3'- ugUGcGGAGGUGGU----UGCGCACGCaGG- -5'
13358 5' -57.4 NC_003409.1 + 26246 0.68 0.734423
Target:  5'- cUACGCCaCUGCguGCGCGUGCGg-- -3'
miRNA:   3'- uGUGCGGaGGUGguUGCGCACGCagg -5'
13358 5' -57.4 NC_003409.1 + 30651 0.7 0.624343
Target:  5'- ---aGCCUCCGCgAGCGCGaaaccacugGgGUCCg -3'
miRNA:   3'- ugugCGGAGGUGgUUGCGCa--------CgCAGG- -5'
13358 5' -57.4 NC_003409.1 + 34270 0.71 0.56388
Target:  5'- gACGCGCCg-CugCAugGCGU-UGUCCg -3'
miRNA:   3'- -UGUGCGGagGugGUugCGCAcGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 37964 0.66 0.833947
Target:  5'- gGCGCGCCUgCGCagcucaaGAgGCG-GCG-CCg -3'
miRNA:   3'- -UGUGCGGAgGUGg------UUgCGCaCGCaGG- -5'
13358 5' -57.4 NC_003409.1 + 39541 0.66 0.833947
Target:  5'- cCGCGuCCUCCAcCCGACGUuUGaGUCUu -3'
miRNA:   3'- uGUGC-GGAGGU-GGUUGCGcACgCAGG- -5'
13358 5' -57.4 NC_003409.1 + 40569 0.66 0.82564
Target:  5'- gGCGCGCCUgUcgacagGCgAGCGCGUGUuucacGUCUu -3'
miRNA:   3'- -UGUGCGGAgG------UGgUUGCGCACG-----CAGG- -5'
13358 5' -57.4 NC_003409.1 + 40700 0.66 0.833947
Target:  5'- cACugGCg-CCACCGAa-CGgccGCGUCCa -3'
miRNA:   3'- -UGugCGgaGGUGGUUgcGCa--CGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 41641 0.68 0.763107
Target:  5'- -aGCGUCgCCGCCAggagACGCG-GUGUCUc -3'
miRNA:   3'- ugUGCGGaGGUGGU----UGCGCaCGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 42836 0.66 0.857758
Target:  5'- -aGCGCCUCC-CUGACGaCGa--GUCCg -3'
miRNA:   3'- ugUGCGGAGGuGGUUGC-GCacgCAGG- -5'
13358 5' -57.4 NC_003409.1 + 42937 0.66 0.857758
Target:  5'- gAC-CGCCcUCGCCGcCGCuUGCGUCa -3'
miRNA:   3'- -UGuGCGGaGGUGGUuGCGcACGCAGg -5'
13358 5' -57.4 NC_003409.1 + 43284 0.66 0.837219
Target:  5'- gGCACG-CUCCACCcgucuuuauuuuaaaGACGCuggGCGaUCCc -3'
miRNA:   3'- -UGUGCgGAGGUGG---------------UUGCGca-CGC-AGG- -5'
13358 5' -57.4 NC_003409.1 + 45684 0.68 0.753648
Target:  5'- aACAUaGUCUCCGCCGccuCGCGagaGCgGUCCg -3'
miRNA:   3'- -UGUG-CGGAGGUGGUu--GCGCa--CG-CAGG- -5'
13358 5' -57.4 NC_003409.1 + 45914 0.66 0.865303
Target:  5'- uGCAUGCU--CACCAugGCGcuaaugGCGcCCg -3'
miRNA:   3'- -UGUGCGGagGUGGUugCGCa-----CGCaGG- -5'
13358 5' -57.4 NC_003409.1 + 46933 0.66 0.842073
Target:  5'- uACugGCCcaugUgUACUGGgGCGUGUGUCUg -3'
miRNA:   3'- -UGugCGG----AgGUGGUUgCGCACGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 52503 0.69 0.673935
Target:  5'- gGCACGCCUCUAaaAAgUGCGauuuaacUGCGUCUg -3'
miRNA:   3'- -UGUGCGGAGGUggUU-GCGC-------ACGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.