miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13358 5' -57.4 NC_003409.1 + 134820 1.12 0.001348
Target:  5'- aACACGCCUCCACCAACGCGUGCGUCCg -3'
miRNA:   3'- -UGUGCGGAGGUGGUUGCGCACGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 132965 0.75 0.37197
Target:  5'- aGCGCGCCgCgCGCCuguGCGCGUGCcagguaacgGUCCu -3'
miRNA:   3'- -UGUGCGGaG-GUGGu--UGCGCACG---------CAGG- -5'
13358 5' -57.4 NC_003409.1 + 130864 0.68 0.753648
Target:  5'- gUugGUCUCCAgguuuaccgcCCAGCGCuggggugguGUGgGUCCg -3'
miRNA:   3'- uGugCGGAGGU----------GGUUGCG---------CACgCAGG- -5'
13358 5' -57.4 NC_003409.1 + 127942 0.69 0.664858
Target:  5'- cCGC-CCUCCACU-ACGCG-GCGcCCg -3'
miRNA:   3'- uGUGcGGAGGUGGuUGCGCaCGCaGG- -5'
13358 5' -57.4 NC_003409.1 + 117676 0.7 0.613196
Target:  5'- gUugGCCUCCAgCAaagcacauuuugcACGCaaaugGCGUCCg -3'
miRNA:   3'- uGugCGGAGGUgGU-------------UGCGca---CGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 116306 0.69 0.704955
Target:  5'- cGCACcCCaUCCACCGAUGCcgaaaucaGUGUCCa -3'
miRNA:   3'- -UGUGcGG-AGGUGGUUGCGca------CGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 115148 0.68 0.734423
Target:  5'- uGCugGaCCUCgACCAugGCGgcaGCGgcagaCCu -3'
miRNA:   3'- -UGugC-GGAGgUGGUugCGCa--CGCa----GG- -5'
13358 5' -57.4 NC_003409.1 + 113431 0.72 0.505074
Target:  5'- gGCGauCGCCUgCGCCAGCGaCGgGCgGUCCa -3'
miRNA:   3'- -UGU--GCGGAgGUGGUUGC-GCaCG-CAGG- -5'
13358 5' -57.4 NC_003409.1 + 111905 0.66 0.865303
Target:  5'- aAC-CGUCUCCGCCAgggACGCcgauaggGCGgCCa -3'
miRNA:   3'- -UGuGCGGAGGUGGU---UGCGca-----CGCaGG- -5'
13358 5' -57.4 NC_003409.1 + 110007 0.68 0.71485
Target:  5'- -gGCGCCaCCGCCucccgcCGCG-GCGUCUu -3'
miRNA:   3'- ugUGCGGaGGUGGuu----GCGCaCGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 109727 0.66 0.82564
Target:  5'- gACGCGCUUCUGgCGugGCGaagugGCGcaugUCCg -3'
miRNA:   3'- -UGUGCGGAGGUgGUugCGCa----CGC----AGG- -5'
13358 5' -57.4 NC_003409.1 + 109619 0.67 0.790765
Target:  5'- gACAUGCgugcgCCGCCucCGCGUGCGa-- -3'
miRNA:   3'- -UGUGCGga---GGUGGuuGCGCACGCagg -5'
13358 5' -57.4 NC_003409.1 + 105100 0.71 0.573878
Target:  5'- cCAUGUCUCCAUCGGCGCcu-UGUCCg -3'
miRNA:   3'- uGUGCGGAGGUGGUUGCGcacGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 97023 0.84 0.107789
Target:  5'- gGCACGCCUCCGCCAgaaGCGUGCccCCu -3'
miRNA:   3'- -UGUGCGGAGGUGGUug-CGCACGcaGG- -5'
13358 5' -57.4 NC_003409.1 + 96656 0.66 0.842073
Target:  5'- uGCACGCCaaC-CCucaGUGUGCuGUCCa -3'
miRNA:   3'- -UGUGCGGagGuGGuugCGCACG-CAGG- -5'
13358 5' -57.4 NC_003409.1 + 96407 0.68 0.71485
Target:  5'- -aACGUCUCCACUGccuuC-CGUGUGUCCc -3'
miRNA:   3'- ugUGCGGAGGUGGUu---GcGCACGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 95519 0.67 0.817161
Target:  5'- -aGCGCCUCUugUGAgGCcucuuuGUGCuGUCCu -3'
miRNA:   3'- ugUGCGGAGGugGUUgCG------CACG-CAGG- -5'
13358 5' -57.4 NC_003409.1 + 91121 0.69 0.678967
Target:  5'- -gGCGCCUCCuguguGCCGAgGUaaaggaaugcuggugGUGCGUUCa -3'
miRNA:   3'- ugUGCGGAGG-----UGGUUgCG---------------CACGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 89129 0.66 0.865303
Target:  5'- uCGCGcCCUCCAUCG-CGCcUGCGaauuuUCCc -3'
miRNA:   3'- uGUGC-GGAGGUGGUuGCGcACGC-----AGG- -5'
13358 5' -57.4 NC_003409.1 + 87235 0.67 0.769661
Target:  5'- -aGCGCCUCCAcuagaccacggaauCCAAagcgGUGUGCGaacuUCCg -3'
miRNA:   3'- ugUGCGGAGGU--------------GGUUg---CGCACGC----AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.