miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13358 5' -57.4 NC_003409.1 + 134820 1.12 0.001348
Target:  5'- aACACGCCUCCACCAACGCGUGCGUCCg -3'
miRNA:   3'- -UGUGCGGAGGUGGUUGCGCACGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 97023 0.84 0.107789
Target:  5'- gGCACGCCUCCGCCAgaaGCGUGCccCCu -3'
miRNA:   3'- -UGUGCGGAGGUGGUug-CGCACGcaGG- -5'
13358 5' -57.4 NC_003409.1 + 132965 0.75 0.37197
Target:  5'- aGCGCGCCgCgCGCCuguGCGCGUGCcagguaacgGUCCu -3'
miRNA:   3'- -UGUGCGGaG-GUGGu--UGCGCACG---------CAGG- -5'
13358 5' -57.4 NC_003409.1 + 56135 0.73 0.449063
Target:  5'- ---aGCCUCCACCuGACGauUGUGUCCu -3'
miRNA:   3'- ugugCGGAGGUGG-UUGCgcACGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 79724 0.73 0.475727
Target:  5'- cGCGCGCa-CCACCAaaucaggACGCGUGCacuuUCCa -3'
miRNA:   3'- -UGUGCGgaGGUGGU-------UGCGCACGc---AGG- -5'
13358 5' -57.4 NC_003409.1 + 113431 0.72 0.505074
Target:  5'- gGCGauCGCCUgCGCCAGCGaCGgGCgGUCCa -3'
miRNA:   3'- -UGU--GCGGAgGUGGUUGC-GCaCG-CAGG- -5'
13358 5' -57.4 NC_003409.1 + 34270 0.71 0.56388
Target:  5'- gACGCGCCg-CugCAugGCGU-UGUCCg -3'
miRNA:   3'- -UGUGCGGagGugGUugCGCAcGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 105100 0.71 0.573878
Target:  5'- cCAUGUCUCCAUCGGCGCcu-UGUCCg -3'
miRNA:   3'- uGUGCGGAGGUGGUUGCGcacGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 117676 0.7 0.613196
Target:  5'- gUugGCCUCCAgCAaagcacauuuugcACGCaaaugGCGUCCg -3'
miRNA:   3'- uGugCGGAGGUgGU-------------UGCGca---CGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 59245 0.7 0.624343
Target:  5'- uACAUGCCUCUGgCGACGuCG-GCG-CCg -3'
miRNA:   3'- -UGUGCGGAGGUgGUUGC-GCaCGCaGG- -5'
13358 5' -57.4 NC_003409.1 + 30651 0.7 0.624343
Target:  5'- ---aGCCUCCGCgAGCGCGaaaccacugGgGUCCg -3'
miRNA:   3'- ugugCGGAGGUGgUUGCGCa--------CgCAGG- -5'
13358 5' -57.4 NC_003409.1 + 22224 0.7 0.654748
Target:  5'- -uGCuUCUCCAUCAgaagACGCGUGCG-CCg -3'
miRNA:   3'- ugUGcGGAGGUGGU----UGCGCACGCaGG- -5'
13358 5' -57.4 NC_003409.1 + 86023 0.69 0.664858
Target:  5'- cGCACuGCCgCCACCc-CGCGgaagauugGUGUCCa -3'
miRNA:   3'- -UGUG-CGGaGGUGGuuGCGCa-------CGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 127942 0.69 0.664858
Target:  5'- cCGC-CCUCCACU-ACGCG-GCGcCCg -3'
miRNA:   3'- uGUGcGGAGGUGGuUGCGCaCGCaGG- -5'
13358 5' -57.4 NC_003409.1 + 52503 0.69 0.673935
Target:  5'- gGCACGCCUCUAaaAAgUGCGauuuaacUGCGUCUg -3'
miRNA:   3'- -UGUGCGGAGGUggUU-GCGC-------ACGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 91121 0.69 0.678967
Target:  5'- -gGCGCCUCCuguguGCCGAgGUaaaggaaugcuggugGUGCGUUCa -3'
miRNA:   3'- ugUGCGGAGG-----UGGUUgCG---------------CACGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 14900 0.69 0.684992
Target:  5'- cGCGCGUUgCCGCCuGugGCGUuuGCGUCg -3'
miRNA:   3'- -UGUGCGGaGGUGG-UugCGCA--CGCAGg -5'
13358 5' -57.4 NC_003409.1 + 116306 0.69 0.704955
Target:  5'- cGCACcCCaUCCACCGAUGCcgaaaucaGUGUCCa -3'
miRNA:   3'- -UGUGcGG-AGGUGGUUGCGca------CGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 55892 0.69 0.708921
Target:  5'- uCGCGCUUCagugCACCGugGgcccugacggcaugcUGUGCGUCCu -3'
miRNA:   3'- uGUGCGGAG----GUGGUugC---------------GCACGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 110007 0.68 0.71485
Target:  5'- -gGCGCCaCCGCCucccgcCGCG-GCGUCUu -3'
miRNA:   3'- ugUGCGGaGGUGGuu----GCGCaCGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.