miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13358 5' -57.4 NC_003409.1 + 79724 0.73 0.475727
Target:  5'- cGCGCGCa-CCACCAaaucaggACGCGUGCacuuUCCa -3'
miRNA:   3'- -UGUGCGgaGGUGGU-------UGCGCACGc---AGG- -5'
13358 5' -57.4 NC_003409.1 + 87235 0.67 0.769661
Target:  5'- -aGCGCCUCCAcuagaccacggaauCCAAagcgGUGUGCGaacuUCCg -3'
miRNA:   3'- ugUGCGGAGGU--------------GGUUg---CGCACGC----AGG- -5'
13358 5' -57.4 NC_003409.1 + 130864 0.68 0.753648
Target:  5'- gUugGUCUCCAgguuuaccgcCCAGCGCuggggugguGUGgGUCCg -3'
miRNA:   3'- uGugCGGAGGU----------GGUUGCG---------CACgCAGG- -5'
13358 5' -57.4 NC_003409.1 + 115148 0.68 0.734423
Target:  5'- uGCugGaCCUCgACCAugGCGgcaGCGgcagaCCu -3'
miRNA:   3'- -UGugC-GGAGgUGGUugCGCa--CGCa----GG- -5'
13358 5' -57.4 NC_003409.1 + 96407 0.68 0.71485
Target:  5'- -aACGUCUCCACUGccuuC-CGUGUGUCCc -3'
miRNA:   3'- ugUGCGGAGGUGGUu---GcGCACGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 116306 0.69 0.704955
Target:  5'- cGCACcCCaUCCACCGAUGCcgaaaucaGUGUCCa -3'
miRNA:   3'- -UGUGcGG-AGGUGGUUGCGca------CGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 42937 0.66 0.857758
Target:  5'- gAC-CGCCcUCGCCGcCGCuUGCGUCa -3'
miRNA:   3'- -UGuGCGGaGGUGGUuGCGcACGCAGg -5'
13358 5' -57.4 NC_003409.1 + 43284 0.66 0.837219
Target:  5'- gGCACG-CUCCACCcgucuuuauuuuaaaGACGCuggGCGaUCCc -3'
miRNA:   3'- -UGUGCgGAGGUGG---------------UUGCGca-CGC-AGG- -5'
13358 5' -57.4 NC_003409.1 + 95519 0.67 0.817161
Target:  5'- -aGCGCCUCUugUGAgGCcucuuuGUGCuGUCCu -3'
miRNA:   3'- ugUGCGGAGGugGUUgCG------CACG-CAGG- -5'
13358 5' -57.4 NC_003409.1 + 81363 0.68 0.763107
Target:  5'- gGCGCGCCUUUACgCuuCGCGaacUGC-UCCa -3'
miRNA:   3'- -UGUGCGGAGGUG-GuuGCGC---ACGcAGG- -5'
13358 5' -57.4 NC_003409.1 + 26246 0.68 0.734423
Target:  5'- cUACGCCaCUGCguGCGCGUGCGg-- -3'
miRNA:   3'- uGUGCGGaGGUGguUGCGCACGCagg -5'
13358 5' -57.4 NC_003409.1 + 113431 0.72 0.505074
Target:  5'- gGCGauCGCCUgCGCCAGCGaCGgGCgGUCCa -3'
miRNA:   3'- -UGU--GCGGAgGUGGUUGC-GCaCG-CAGG- -5'
13358 5' -57.4 NC_003409.1 + 39541 0.66 0.833947
Target:  5'- cCGCGuCCUCCAcCCGACGUuUGaGUCUu -3'
miRNA:   3'- uGUGC-GGAGGU-GGUUGCGcACgCAGG- -5'
13358 5' -57.4 NC_003409.1 + 34270 0.71 0.56388
Target:  5'- gACGCGCCg-CugCAugGCGU-UGUCCg -3'
miRNA:   3'- -UGUGCGGagGugGUugCGCAcGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 41641 0.68 0.763107
Target:  5'- -aGCGUCgCCGCCAggagACGCG-GUGUCUc -3'
miRNA:   3'- ugUGCGGaGGUGGU----UGCGCaCGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 37964 0.66 0.833947
Target:  5'- gGCGCGCCUgCGCagcucaaGAgGCG-GCG-CCg -3'
miRNA:   3'- -UGUGCGGAgGUGg------UUgCGCaCGCaGG- -5'
13358 5' -57.4 NC_003409.1 + 89129 0.66 0.865303
Target:  5'- uCGCGcCCUCCAUCG-CGCcUGCGaauuuUCCc -3'
miRNA:   3'- uGUGC-GGAGGUGGUuGCGcACGC-----AGG- -5'
13358 5' -57.4 NC_003409.1 + 22224 0.7 0.654748
Target:  5'- -uGCuUCUCCAUCAgaagACGCGUGCG-CCg -3'
miRNA:   3'- ugUGcGGAGGUGGU----UGCGCACGCaGG- -5'
13358 5' -57.4 NC_003409.1 + 9602 0.67 0.808516
Target:  5'- -uGgGCCUCCgagagcaagACCAcgGC-CGUGUGUCCg -3'
miRNA:   3'- ugUgCGGAGG---------UGGU--UGcGCACGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 55892 0.69 0.708921
Target:  5'- uCGCGCUUCagugCACCGugGgcccugacggcaugcUGUGCGUCCu -3'
miRNA:   3'- uGUGCGGAG----GUGGUugC---------------GCACGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.