miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13358 5' -57.4 NC_003409.1 + 30651 0.7 0.624343
Target:  5'- ---aGCCUCCGCgAGCGCGaaaccacugGgGUCCg -3'
miRNA:   3'- ugugCGGAGGUGgUUGCGCa--------CgCAGG- -5'
13358 5' -57.4 NC_003409.1 + 45684 0.68 0.753648
Target:  5'- aACAUaGUCUCCGCCGccuCGCGagaGCgGUCCg -3'
miRNA:   3'- -UGUG-CGGAGGUGGUu--GCGCa--CG-CAGG- -5'
13358 5' -57.4 NC_003409.1 + 110007 0.68 0.71485
Target:  5'- -gGCGCCaCCGCCucccgcCGCG-GCGUCUu -3'
miRNA:   3'- ugUGCGGaGGUGGuu----GCGCaCGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 55892 0.69 0.708921
Target:  5'- uCGCGCUUCagugCACCGugGgcccugacggcaugcUGUGCGUCCu -3'
miRNA:   3'- uGUGCGGAG----GUGGUugC---------------GCACGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 14900 0.69 0.684992
Target:  5'- cGCGCGUUgCCGCCuGugGCGUuuGCGUCg -3'
miRNA:   3'- -UGUGCGGaGGUGG-UugCGCA--CGCAGg -5'
13358 5' -57.4 NC_003409.1 + 91121 0.69 0.678967
Target:  5'- -gGCGCCUCCuguguGCCGAgGUaaaggaaugcuggugGUGCGUUCa -3'
miRNA:   3'- ugUGCGGAGG-----UGGUUgCG---------------CACGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 52503 0.69 0.673935
Target:  5'- gGCACGCCUCUAaaAAgUGCGauuuaacUGCGUCUg -3'
miRNA:   3'- -UGUGCGGAGGUggUU-GCGC-------ACGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 127942 0.69 0.664858
Target:  5'- cCGC-CCUCCACU-ACGCG-GCGcCCg -3'
miRNA:   3'- uGUGcGGAGGUGGuUGCGCaCGCaGG- -5'
13358 5' -57.4 NC_003409.1 + 86023 0.69 0.664858
Target:  5'- cGCACuGCCgCCACCc-CGCGgaagauugGUGUCCa -3'
miRNA:   3'- -UGUG-CGGaGGUGGuuGCGCa-------CGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 109619 0.67 0.790765
Target:  5'- gACAUGCgugcgCCGCCucCGCGUGCGa-- -3'
miRNA:   3'- -UGUGCGga---GGUGGuuGCGCACGCagg -5'
13358 5' -57.4 NC_003409.1 + 83314 0.67 0.799715
Target:  5'- uACAUGCCUCUACUAA-GCG-GUuUCCc -3'
miRNA:   3'- -UGUGCGGAGGUGGUUgCGCaCGcAGG- -5'
13358 5' -57.4 NC_003409.1 + 16986 0.67 0.799715
Target:  5'- -gGCGUUUCCA---AUGUGUGUGUCCg -3'
miRNA:   3'- ugUGCGGAGGUgguUGCGCACGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 45914 0.66 0.865303
Target:  5'- uGCAUGCU--CACCAugGCGcuaaugGCGcCCg -3'
miRNA:   3'- -UGUGCGGagGUGGUugCGCa-----CGCaGG- -5'
13358 5' -57.4 NC_003409.1 + 42836 0.66 0.857758
Target:  5'- -aGCGCCUCC-CUGACGaCGa--GUCCg -3'
miRNA:   3'- ugUGCGGAGGuGGUUGC-GCacgCAGG- -5'
13358 5' -57.4 NC_003409.1 + 46933 0.66 0.842073
Target:  5'- uACugGCCcaugUgUACUGGgGCGUGUGUCUg -3'
miRNA:   3'- -UGugCGG----AgGUGGUUgCGCACGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 13700 0.66 0.842073
Target:  5'- uAUugGCCUCCGCaggaGACcCGcuagGCGuUCCg -3'
miRNA:   3'- -UGugCGGAGGUGg---UUGcGCa---CGC-AGG- -5'
13358 5' -57.4 NC_003409.1 + 96656 0.66 0.842073
Target:  5'- uGCACGCCaaC-CCucaGUGUGCuGUCCa -3'
miRNA:   3'- -UGUGCGGagGuGGuugCGCACG-CAGG- -5'
13358 5' -57.4 NC_003409.1 + 40700 0.66 0.833947
Target:  5'- cACugGCg-CCACCGAa-CGgccGCGUCCa -3'
miRNA:   3'- -UGugCGgaGGUGGUUgcGCa--CGCAGG- -5'
13358 5' -57.4 NC_003409.1 + 40569 0.66 0.82564
Target:  5'- gGCGCGCCUgUcgacagGCgAGCGCGUGUuucacGUCUu -3'
miRNA:   3'- -UGUGCGGAgG------UGgUUGCGCACG-----CAGG- -5'
13358 5' -57.4 NC_003409.1 + 109727 0.66 0.82564
Target:  5'- gACGCGCUUCUGgCGugGCGaagugGCGcaugUCCg -3'
miRNA:   3'- -UGUGCGGAGGUgGUugCGCa----CGC----AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.