Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13359 | 3' | -58.4 | NC_003409.1 | + | 111997 | 0.66 | 0.784995 |
Target: 5'- -gUGCCGGAUGCaggGCCUggccUCGaagGCACg -3' miRNA: 3'- cuGCGGUCUACGgg-CGGA----AGCa--CGUG- -5' |
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13359 | 3' | -58.4 | NC_003409.1 | + | 94757 | 0.69 | 0.60584 |
Target: 5'- uGGCGgCAGuguUGCUCaCCUUgGUGCACa -3' miRNA: 3'- -CUGCgGUCu--ACGGGcGGAAgCACGUG- -5' |
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13359 | 3' | -58.4 | NC_003409.1 | + | 93312 | 0.66 | 0.737435 |
Target: 5'- --aGCCAGGUGCaggGCCcauuacaCGUGCACa -3' miRNA: 3'- cugCGGUCUACGgg-CGGaa-----GCACGUG- -5' |
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13359 | 3' | -58.4 | NC_003409.1 | + | 87462 | 0.67 | 0.686564 |
Target: 5'- --gGCCuucuguAGAUGCCCcgcaagcGCCUUCG-GCACc -3' miRNA: 3'- cugCGG------UCUACGGG-------CGGAAGCaCGUG- -5' |
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13359 | 3' | -58.4 | NC_003409.1 | + | 62880 | 0.7 | 0.525277 |
Target: 5'- gGACGCCGGGgaugGaCgCgGCCUUCGUcauGCACg -3' miRNA: 3'- -CUGCGGUCUa---C-G-GgCGGAAGCA---CGUG- -5' |
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13359 | 3' | -58.4 | NC_003409.1 | + | 43696 | 0.66 | 0.76632 |
Target: 5'- gGACGCCGGccaccugcUGCCCagagGCCgUgGUGUACg -3' miRNA: 3'- -CUGCGGUCu-------ACGGG----CGGaAgCACGUG- -5' |
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13359 | 3' | -58.4 | NC_003409.1 | + | 20171 | 0.68 | 0.657035 |
Target: 5'- gGGCGUCaaggcggaaacaGGAUGCCCGCUcaUGUGCGu -3' miRNA: 3'- -CUGCGG------------UCUACGGGCGGaaGCACGUg -5' |
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13359 | 3' | -58.4 | NC_003409.1 | + | 4149 | 1.09 | 0.001374 |
Target: 5'- aGACGCCAGAUGCCCGCCUUCGUGCACu -3' miRNA: 3'- -CUGCGGUCUACGGGCGGAAGCACGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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