miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13360 3' -52.6 NC_003409.1 + 67592 0.66 0.976887
Target:  5'- -aGAGGAGGCGGUagacuGCCuuUugCGCu -3'
miRNA:   3'- ucUUUCUCUGCCAgu---CGGucAugGCG- -5'
13360 3' -52.6 NC_003409.1 + 50974 0.66 0.976887
Target:  5'- -aAGAGGGcCaGUUuuuagGGCCGGUACCGUa -3'
miRNA:   3'- ucUUUCUCuGcCAG-----UCGGUCAUGGCG- -5'
13360 3' -52.6 NC_003409.1 + 14777 0.66 0.974295
Target:  5'- gAGAAGGGGAUucUUAGCCGcGUuagucGCCGCu -3'
miRNA:   3'- -UCUUUCUCUGccAGUCGGU-CA-----UGGCG- -5'
13360 3' -52.6 NC_003409.1 + 31214 0.66 0.974295
Target:  5'- gAGGAGGAcGGCGGU-GGCCcugcGUGCCa- -3'
miRNA:   3'- -UCUUUCU-CUGCCAgUCGGu---CAUGGcg -5'
13360 3' -52.6 NC_003409.1 + 26487 0.66 0.974295
Target:  5'- gGGAAAGGGGaGGUgAGCagAGUGCC-Ca -3'
miRNA:   3'- -UCUUUCUCUgCCAgUCGg-UCAUGGcG- -5'
13360 3' -52.6 NC_003409.1 + 65438 0.66 0.974295
Target:  5'- ---cGGuGACaGUUGGCCAGUACCu- -3'
miRNA:   3'- ucuuUCuCUGcCAGUCGGUCAUGGcg -5'
13360 3' -52.6 NC_003409.1 + 79154 0.66 0.968487
Target:  5'- ------uGGCGGUCGGCgAGauUACCGUg -3'
miRNA:   3'- ucuuucuCUGCCAGUCGgUC--AUGGCG- -5'
13360 3' -52.6 NC_003409.1 + 87806 0.66 0.968487
Target:  5'- gGGGAcGuAGAUGG-CAGCCAGacccAUCGCg -3'
miRNA:   3'- -UCUUuC-UCUGCCaGUCGGUCa---UGGCG- -5'
13360 3' -52.6 NC_003409.1 + 44742 0.66 0.968487
Target:  5'- -uAAGGAGGCGcaCGGCCAcUACCGg -3'
miRNA:   3'- ucUUUCUCUGCcaGUCGGUcAUGGCg -5'
13360 3' -52.6 NC_003409.1 + 111833 0.66 0.965258
Target:  5'- cAGAGGGGGGuuuccuCGcGUCGGCC---ACCGCg -3'
miRNA:   3'- -UCUUUCUCU------GC-CAGUCGGucaUGGCG- -5'
13360 3' -52.6 NC_003409.1 + 13018 0.67 0.958117
Target:  5'- -aAAGGAGacGCGGUUAGCgGGUAUCa- -3'
miRNA:   3'- ucUUUCUC--UGCCAGUCGgUCAUGGcg -5'
13360 3' -52.6 NC_003409.1 + 128196 0.67 0.958117
Target:  5'- uGggGuGGugGuUCAGacCCAGUACCGCc -3'
miRNA:   3'- uCuuUcUCugCcAGUC--GGUCAUGGCG- -5'
13360 3' -52.6 NC_003409.1 + 70792 0.67 0.950031
Target:  5'- cGGAcguGAGACGGUUggagucaugcauGGCCAGUGuCCu- -3'
miRNA:   3'- -UCUuu-CUCUGCCAG------------UCGGUCAU-GGcg -5'
13360 3' -52.6 NC_003409.1 + 127257 0.68 0.942389
Target:  5'- aAGggGGAGcucucagacaauuaaGCGGUUacacacaguagcaGGCugCAGUACCGCc -3'
miRNA:   3'- -UCuuUCUC---------------UGCCAG-------------UCG--GUCAUGGCG- -5'
13360 3' -52.6 NC_003409.1 + 131709 0.68 0.940966
Target:  5'- cAGAGGuGcuGCGGgCGGCCAGggacUACCGCu -3'
miRNA:   3'- -UCUUU-CucUGCCaGUCGGUC----AUGGCG- -5'
13360 3' -52.6 NC_003409.1 + 23540 0.68 0.940966
Target:  5'- cGAAcGGGAuUGGUCGGCCGGauggGCCa- -3'
miRNA:   3'- uCUUuCUCU-GCCAGUCGGUCa---UGGcg -5'
13360 3' -52.6 NC_003409.1 + 119470 0.68 0.940966
Target:  5'- cGAAcGGGAuUGGUCGGCCGGauggGCCa- -3'
miRNA:   3'- uCUUuCUCU-GCCAGUCGGUCa---UGGcg -5'
13360 3' -52.6 NC_003409.1 + 44816 0.68 0.940966
Target:  5'- cGGGAcacGAGACGGUgGGUCGGacGCCGa -3'
miRNA:   3'- -UCUUu--CUCUGCCAgUCGGUCa-UGGCg -5'
13360 3' -52.6 NC_003409.1 + 55809 0.68 0.940487
Target:  5'- -aAAAGGGaACGGUCAauuuugcGCCA--GCCGCg -3'
miRNA:   3'- ucUUUCUC-UGCCAGU-------CGGUcaUGGCG- -5'
13360 3' -52.6 NC_003409.1 + 64819 0.68 0.919825
Target:  5'- aAGAGGGAGAUGGaCAGCuCGGaagGgUGCa -3'
miRNA:   3'- -UCUUUCUCUGCCaGUCG-GUCa--UgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.