miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13360 5' -56.2 NC_003409.1 + 111723 0.66 0.897823
Target:  5'- -cGGGGUCCACGG-CGAuguCCUGa---- -3'
miRNA:   3'- ccCCCCAGGUGCCuGUU---GGACagaau -5'
13360 5' -56.2 NC_003409.1 + 47106 0.66 0.897823
Target:  5'- uGGaGGaGGUUCGCccGGACAGCCUG-Cg-- -3'
miRNA:   3'- -CC-CC-CCAGGUG--CCUGUUGGACaGaau -5'
13360 5' -56.2 NC_003409.1 + 42174 0.66 0.891192
Target:  5'- uGGGGGUggCACGGAgAGCUgGUCUc- -3'
miRNA:   3'- cCCCCCAg-GUGCCUgUUGGaCAGAau -5'
13360 5' -56.2 NC_003409.1 + 62635 0.66 0.889157
Target:  5'- uGGGGuGGcccugaaaugaucgUCCACGGACAGCUcGUa--- -3'
miRNA:   3'- -CCCC-CC--------------AGGUGCCUGUUGGaCAgaau -5'
13360 5' -56.2 NC_003409.1 + 26939 0.66 0.869937
Target:  5'- aGGGcGGGgcgcgCCGuguuuUGGACAACUUGUCc-- -3'
miRNA:   3'- -CCC-CCCa----GGU-----GCCUGUUGGACAGaau -5'
13360 5' -56.2 NC_003409.1 + 72947 0.68 0.795264
Target:  5'- uGGGGG-CCugGaGGCGACUcGUCUg- -3'
miRNA:   3'- cCCCCCaGGugC-CUGUUGGaCAGAau -5'
13360 5' -56.2 NC_003409.1 + 45009 0.7 0.668054
Target:  5'- -aGGGGUCgCAUGGAgGACCUaGUCa-- -3'
miRNA:   3'- ccCCCCAG-GUGCCUgUUGGA-CAGaau -5'
13360 5' -56.2 NC_003409.1 + 108528 0.7 0.647541
Target:  5'- aGGGGGGgaaggCCGCGGugGAauCCUGg---- -3'
miRNA:   3'- -CCCCCCa----GGUGCCugUU--GGACagaau -5'
13360 5' -56.2 NC_003409.1 + 92981 0.72 0.575774
Target:  5'- aGGaGGGGUCCACGGAgAG--UGUCUc- -3'
miRNA:   3'- -CC-CCCCAGGUGCCUgUUggACAGAau -5'
13360 5' -56.2 NC_003409.1 + 92807 0.72 0.575774
Target:  5'- aGGaGGGGUCCACGGAgAG--UGUCUc- -3'
miRNA:   3'- -CC-CCCCAGGUGCCUgUUggACAGAau -5'
13360 5' -56.2 NC_003409.1 + 6397 0.74 0.439982
Target:  5'- cGGGGGUgCCAUGGACGGCCgaggGUgUg- -3'
miRNA:   3'- cCCCCCA-GGUGCCUGUUGGa---CAgAau -5'
13360 5' -56.2 NC_003409.1 + 10035 1.09 0.002556
Target:  5'- cGGGGGGUCCACGGACAACCUGUCUUAc -3'
miRNA:   3'- -CCCCCCAGGUGCCUGUUGGACAGAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.