miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13362 3' -54.3 NC_003409.1 + 116497 0.66 0.913009
Target:  5'- gGUCgC-CAAGCUGaugUGGCuGGACACUg -3'
miRNA:   3'- -CAG-GaGUUCGACga-GCCGuCUUGUGA- -5'
13362 3' -54.3 NC_003409.1 + 35360 0.66 0.906771
Target:  5'- gGUUUUgGAGCgGaCUCGGUGGGGCGCg -3'
miRNA:   3'- -CAGGAgUUCGaC-GAGCCGUCUUGUGa -5'
13362 3' -54.3 NC_003409.1 + 48191 0.67 0.892168
Target:  5'- aUCCUCAAGCcguUGUgagaauuugagGGCAGGGCACc -3'
miRNA:   3'- cAGGAGUUCG---ACGag---------CCGUCUUGUGa -5'
13362 3' -54.3 NC_003409.1 + 133095 0.67 0.885138
Target:  5'- gGUCCggaugccgugaAGGCgGCggUGGCAGAGCACUu -3'
miRNA:   3'- -CAGGag---------UUCGaCGa-GCCGUCUUGUGA- -5'
13362 3' -54.3 NC_003409.1 + 64108 0.67 0.879341
Target:  5'- cUCCUCAAcCUGCUCaugaaacuGGCAGAAaACa -3'
miRNA:   3'- cAGGAGUUcGACGAG--------CCGUCUUgUGa -5'
13362 3' -54.3 NC_003409.1 + 54872 0.67 0.871884
Target:  5'- aGUCCUCGGGCaggGUuucgggCGGCGGGugaggaaaucGCACUg -3'
miRNA:   3'- -CAGGAGUUCGa--CGa-----GCCGUCU----------UGUGA- -5'
13362 3' -54.3 NC_003409.1 + 37347 0.69 0.804537
Target:  5'- gGUUCUCccauugauGAGCUGCgUGGCGGAGCGg- -3'
miRNA:   3'- -CAGGAG--------UUCGACGaGCCGUCUUGUga -5'
13362 3' -54.3 NC_003409.1 + 32857 0.69 0.795276
Target:  5'- -cCCUgCAGGCUGCUCcuugcGGCGGGcUACUg -3'
miRNA:   3'- caGGA-GUUCGACGAG-----CCGUCUuGUGA- -5'
13362 3' -54.3 NC_003409.1 + 37636 0.69 0.785858
Target:  5'- aUCCgcCAAGgUGCcCgGGCAGAGCGCUa -3'
miRNA:   3'- cAGGa-GUUCgACGaG-CCGUCUUGUGA- -5'
13362 3' -54.3 NC_003409.1 + 42825 0.7 0.756756
Target:  5'- cUCUUCAAGagcuuucagcuaUUGCUCGGCaAGGACGCc -3'
miRNA:   3'- cAGGAGUUC------------GACGAGCCG-UCUUGUGa -5'
13362 3' -54.3 NC_003409.1 + 11738 1.09 0.003262
Target:  5'- cGUCCUCAAGCUGCUCGGCAGAACACUa -3'
miRNA:   3'- -CAGGAGUUCGACGAGCCGUCUUGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.