miRNA display CGI


Results 41 - 60 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13365 5' -60.3 NC_003409.1 + 38791 0.68 0.595619
Target:  5'- cCGCguCAGaGCGGaCGAC-UGCGGCGCc -3'
miRNA:   3'- uGCGguGUC-CGCC-GUUGcGCGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 14922 0.68 0.595619
Target:  5'- cACGCCA--GGCGcGaCGAUGCGUcGCGCg -3'
miRNA:   3'- -UGCGGUguCCGC-C-GUUGCGCGcUGCG- -5'
13365 5' -60.3 NC_003409.1 + 19286 0.68 0.595619
Target:  5'- cACGUCGCA-GCGGCAAgGCcaGCGGCc- -3'
miRNA:   3'- -UGCGGUGUcCGCCGUUgCG--CGCUGcg -5'
13365 5' -60.3 NC_003409.1 + 123617 0.68 0.585694
Target:  5'- gGCGCCaaaugcaaguGCGGaGCGGCGACG-GUGGCu- -3'
miRNA:   3'- -UGCGG----------UGUC-CGCCGUUGCgCGCUGcg -5'
13365 5' -60.3 NC_003409.1 + 20731 0.68 0.585694
Target:  5'- -gGCacuUugGGGCGGCGuACGUG-GACGCg -3'
miRNA:   3'- ugCG---GugUCCGCCGU-UGCGCgCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 88010 0.68 0.584703
Target:  5'- gACGCCGgGGGauacggGGCAACuagccccucccauGCGCGAUGg -3'
miRNA:   3'- -UGCGGUgUCCg-----CCGUUG-------------CGCGCUGCg -5'
13365 5' -60.3 NC_003409.1 + 110746 0.68 0.575801
Target:  5'- uUGUgAguGGCGGCGugGCgGCGACc- -3'
miRNA:   3'- uGCGgUguCCGCCGUugCG-CGCUGcg -5'
13365 5' -60.3 NC_003409.1 + 36531 0.68 0.565946
Target:  5'- -aGCCACAGaaGGCGACGUG-GuCGCc -3'
miRNA:   3'- ugCGGUGUCcgCCGUUGCGCgCuGCG- -5'
13365 5' -60.3 NC_003409.1 + 51995 0.69 0.546373
Target:  5'- cACGCCACAGGCcacccccCGUGCGACu- -3'
miRNA:   3'- -UGCGGUGUCCGccguu--GCGCGCUGcg -5'
13365 5' -60.3 NC_003409.1 + 109915 0.69 0.546373
Target:  5'- aGCGCCuggucggcCAGGCGcaGgAACGCucugGCGGCGCu -3'
miRNA:   3'- -UGCGGu-------GUCCGC--CgUUGCG----CGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 112909 0.69 0.536668
Target:  5'- cUGCuCGCAGGCgGGCAGCacuaCGUGGCGg -3'
miRNA:   3'- uGCG-GUGUCCG-CCGUUGc---GCGCUGCg -5'
13365 5' -60.3 NC_003409.1 + 113947 0.69 0.530873
Target:  5'- -gGCCGCAcagGGUGGUgccgguuuucccaccAACGgcCGCGACGCg -3'
miRNA:   3'- ugCGGUGU---CCGCCG---------------UUGC--GCGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 32119 0.69 0.527022
Target:  5'- uGCGcCCugGGGCGcCGACGCGgcacaGugGCc -3'
miRNA:   3'- -UGC-GGugUCCGCcGUUGCGCg----CugCG- -5'
13365 5' -60.3 NC_003409.1 + 121681 0.69 0.527022
Target:  5'- cGCGCCgggaacacGCAGGUGGCAGCGgaUGUGuuuUGCc -3'
miRNA:   3'- -UGCGG--------UGUCCGCCGUUGC--GCGCu--GCG- -5'
13365 5' -60.3 NC_003409.1 + 79697 0.69 0.526061
Target:  5'- -aGCCGCuguuGGagauaauCGGUGGCGCGCG-CGCa -3'
miRNA:   3'- ugCGGUGu---CC-------GCCGUUGCGCGCuGCG- -5'
13365 5' -60.3 NC_003409.1 + 40797 0.69 0.517443
Target:  5'- -gGCCcCGGGCGGCGGCuCGCcuaAUGCa -3'
miRNA:   3'- ugCGGuGUCCGCCGUUGcGCGc--UGCG- -5'
13365 5' -60.3 NC_003409.1 + 14894 0.69 0.517443
Target:  5'- uUGCCGCcuGUGGCGuuuGCGUcggccacuacgGCGACGCa -3'
miRNA:   3'- uGCGGUGucCGCCGU---UGCG-----------CGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 113590 0.69 0.507933
Target:  5'- cCGUCGCuGGCgcaGGCGAucgccguguUGCGCGugGCu -3'
miRNA:   3'- uGCGGUGuCCG---CCGUU---------GCGCGCugCG- -5'
13365 5' -60.3 NC_003409.1 + 81333 0.69 0.506986
Target:  5'- cCGCCcccaacgGCaAGGC-GCAguACGUGCGGCGCg -3'
miRNA:   3'- uGCGG-------UG-UCCGcCGU--UGCGCGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 27849 0.7 0.489143
Target:  5'- gGCGCCACA----GCGACGC-CGGCGCa -3'
miRNA:   3'- -UGCGGUGUccgcCGUUGCGcGCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.