miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13365 5' -60.3 NC_003409.1 + 102828 0.66 0.675351
Target:  5'- cUGCCG-AGGCGGCAAcCGgGCucaucccugccaGGCGCc -3'
miRNA:   3'- uGCGGUgUCCGCCGUU-GCgCG------------CUGCG- -5'
13365 5' -60.3 NC_003409.1 + 45891 0.66 0.675351
Target:  5'- gGCGCCcgggguggccugACAagacGCGGCAuACGcCGCGACGg -3'
miRNA:   3'- -UGCGG------------UGUc---CGCCGU-UGC-GCGCUGCg -5'
13365 5' -60.3 NC_003409.1 + 132981 0.66 0.675351
Target:  5'- cCGUUGgAGGUacuGCAGCGCGCcGCGCg -3'
miRNA:   3'- uGCGGUgUCCGc--CGUUGCGCGcUGCG- -5'
13365 5' -60.3 NC_003409.1 + 83820 0.67 0.665421
Target:  5'- gGCuCCACGuGGCGGaagGugGCGCGGgGUu -3'
miRNA:   3'- -UGcGGUGU-CCGCCg--UugCGCGCUgCG- -5'
13365 5' -60.3 NC_003409.1 + 40554 0.67 0.665421
Target:  5'- gGCGCCaguGCAGGCcuaguuuGCGAaugGCGUGACGg -3'
miRNA:   3'- -UGCGG---UGUCCGc------CGUUg--CGCGCUGCg -5'
13365 5' -60.3 NC_003409.1 + 110981 0.67 0.665421
Target:  5'- uGCGgUGCuGGCagaugcgguauaGGCGACGgGCGAUGUg -3'
miRNA:   3'- -UGCgGUGuCCG------------CCGUUGCgCGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 123758 0.67 0.655465
Target:  5'- gGCGCCAUGGGUGcUggUGUGUGugGg -3'
miRNA:   3'- -UGCGGUGUCCGCcGuuGCGCGCugCg -5'
13365 5' -60.3 NC_003409.1 + 119989 0.67 0.655465
Target:  5'- -aGCaGCuAGGCGcgacugagagaGCAcGCGCGCGGCGCc -3'
miRNA:   3'- ugCGgUG-UCCGC-----------CGU-UGCGCGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 31230 0.67 0.655465
Target:  5'- gGCGCCACAcGGUcaguucCAGCaaGCGGCGCc -3'
miRNA:   3'- -UGCGGUGU-CCGcc----GUUGcgCGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 118622 0.67 0.635507
Target:  5'- gUGCCGCcGcGCGcGUAAUGCGCGAgGg -3'
miRNA:   3'- uGCGGUGuC-CGC-CGUUGCGCGCUgCg -5'
13365 5' -60.3 NC_003409.1 + 119802 0.67 0.635507
Target:  5'- gGCGCCGgcgUGGGC-GCcGCGCGCG-UGCu -3'
miRNA:   3'- -UGCGGU---GUCCGcCGuUGCGCGCuGCG- -5'
13365 5' -60.3 NC_003409.1 + 16803 0.67 0.635507
Target:  5'- gUGCCAgAcuaccuGGCGGCcGCGCGgGGCcaGCg -3'
miRNA:   3'- uGCGGUgU------CCGCCGuUGCGCgCUG--CG- -5'
13365 5' -60.3 NC_003409.1 + 98873 0.67 0.629516
Target:  5'- gACGCCaACAGGcCguuuuuuuguuuugaGGCcuUGgGCGACGCa -3'
miRNA:   3'- -UGCGG-UGUCC-G---------------CCGuuGCgCGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 7641 0.67 0.625521
Target:  5'- cCGUCGCAGGUGGCAuC-CGaGugGCc -3'
miRNA:   3'- uGCGGUGUCCGCCGUuGcGCgCugCG- -5'
13365 5' -60.3 NC_003409.1 + 116573 0.67 0.624523
Target:  5'- cGCGCCcCGGGCGGgaccgacCGAgGCGgGAUGa -3'
miRNA:   3'- -UGCGGuGUCCGCC-------GUUgCGCgCUGCg -5'
13365 5' -60.3 NC_003409.1 + 97129 0.67 0.61554
Target:  5'- -gGCCA-AGGCGGCcg-GgGUGACGCu -3'
miRNA:   3'- ugCGGUgUCCGCCGuugCgCGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 59261 0.67 0.61554
Target:  5'- uACGCCG-AGuGCGGCAuacAUGCcucugGCGACGUc -3'
miRNA:   3'- -UGCGGUgUC-CGCCGU---UGCG-----CGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 49113 0.67 0.61554
Target:  5'- cGCGCCACcccacuAGGCagGGCcAC-CGUGGCGUa -3'
miRNA:   3'- -UGCGGUG------UCCG--CCGuUGcGCGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 73582 0.68 0.60557
Target:  5'- gUGCCGCAGGCaauGCca-GCGCGGgGUa -3'
miRNA:   3'- uGCGGUGUCCGc--CGuugCGCGCUgCG- -5'
13365 5' -60.3 NC_003409.1 + 19294 0.68 0.60557
Target:  5'- uGCGCCACgugGGGCgGGCAuACGCuGCuguaaacACGCg -3'
miRNA:   3'- -UGCGGUG---UCCG-CCGU-UGCG-CGc------UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.