miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13365 5' -60.3 NC_003409.1 + 38791 0.68 0.595619
Target:  5'- cCGCguCAGaGCGGaCGAC-UGCGGCGCc -3'
miRNA:   3'- uGCGguGUC-CGCC-GUUGcGCGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 40554 0.67 0.665421
Target:  5'- gGCGCCaguGCAGGCcuaguuuGCGAaugGCGUGACGg -3'
miRNA:   3'- -UGCGG---UGUCCGc------CGUUg--CGCGCUGCg -5'
13365 5' -60.3 NC_003409.1 + 40797 0.69 0.517443
Target:  5'- -gGCCcCGGGCGGCGGCuCGCcuaAUGCa -3'
miRNA:   3'- ugCGGuGUCCGCCGUUGcGCGc--UGCG- -5'
13365 5' -60.3 NC_003409.1 + 45891 0.66 0.675351
Target:  5'- gGCGCCcgggguggccugACAagacGCGGCAuACGcCGCGACGg -3'
miRNA:   3'- -UGCGG------------UGUc---CGCCGU-UGC-GCGCUGCg -5'
13365 5' -60.3 NC_003409.1 + 46320 0.73 0.309018
Target:  5'- --cCCGgGGGCGuGCGGCGUGCGugGUg -3'
miRNA:   3'- ugcGGUgUCCGC-CGUUGCGCGCugCG- -5'
13365 5' -60.3 NC_003409.1 + 49113 0.67 0.61554
Target:  5'- cGCGCCACcccacuAGGCagGGCcAC-CGUGGCGUa -3'
miRNA:   3'- -UGCGGUG------UCCG--CCGuUGcGCGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 49284 0.73 0.302143
Target:  5'- uACGCCAC-GGUGGCccugccuaGugGgGUGGCGCg -3'
miRNA:   3'- -UGCGGUGuCCGCCG--------UugCgCGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 51599 0.71 0.392421
Target:  5'- -gGCUcCAGG-GGUAugGCGUGAUGCa -3'
miRNA:   3'- ugCGGuGUCCgCCGUugCGCGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 51995 0.69 0.546373
Target:  5'- cACGCCACAGGCcacccccCGUGCGACu- -3'
miRNA:   3'- -UGCGGUGUCCGccguu--GCGCGCUGcg -5'
13365 5' -60.3 NC_003409.1 + 52159 0.66 0.724333
Target:  5'- -aGUCGCAcggggGGUGGCcuGugGCGUGuGCGCg -3'
miRNA:   3'- ugCGGUGU-----CCGCCG--UugCGCGC-UGCG- -5'
13365 5' -60.3 NC_003409.1 + 52408 0.66 0.68426
Target:  5'- gUGCgACAGGCGGCcucuAGCGUGUccacaaaGuCGCa -3'
miRNA:   3'- uGCGgUGUCCGCCG----UUGCGCG-------CuGCG- -5'
13365 5' -60.3 NC_003409.1 + 55878 0.66 0.728184
Target:  5'- gACGCCGuCgcgaccucaaagaagAGGUGGCcgUGCGCcuaGAUGCg -3'
miRNA:   3'- -UGCGGU-G---------------UCCGCCGuuGCGCG---CUGCG- -5'
13365 5' -60.3 NC_003409.1 + 59261 0.67 0.61554
Target:  5'- uACGCCG-AGuGCGGCAuacAUGCcucugGCGACGUc -3'
miRNA:   3'- -UGCGGUgUC-CGCCGU---UGCG-----CGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 67796 0.66 0.704908
Target:  5'- gACGaUCGCGGuGgGuGCGGCGCGCagggGGCGCc -3'
miRNA:   3'- -UGC-GGUGUC-CgC-CGUUGCGCG----CUGCG- -5'
13365 5' -60.3 NC_003409.1 + 73582 0.68 0.60557
Target:  5'- gUGCCGCAGGCaauGCca-GCGCGGgGUa -3'
miRNA:   3'- uGCGGUGUCCGc--CGuugCGCGCUgCG- -5'
13365 5' -60.3 NC_003409.1 + 79697 0.69 0.526061
Target:  5'- -aGCCGCuguuGGagauaauCGGUGGCGCGCG-CGCa -3'
miRNA:   3'- ugCGGUGu---CC-------GCCGUUGCGCGCuGCG- -5'
13365 5' -60.3 NC_003409.1 + 81333 0.69 0.506986
Target:  5'- cCGCCcccaacgGCaAGGC-GCAguACGUGCGGCGCg -3'
miRNA:   3'- uGCGG-------UG-UCCGcCGU--UGCGCGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 83820 0.67 0.665421
Target:  5'- gGCuCCACGuGGCGGaagGugGCGCGGgGUu -3'
miRNA:   3'- -UGcGGUGU-CCGCCg--UugCGCGCUgCG- -5'
13365 5' -60.3 NC_003409.1 + 85865 0.76 0.212909
Target:  5'- --uCCGCgGGGUGGCGGCaGUGCGACGCa -3'
miRNA:   3'- ugcGGUG-UCCGCCGUUG-CGCGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 86784 0.66 0.704908
Target:  5'- -gGCCACGGauaGGCGGCGCcCGAgGUc -3'
miRNA:   3'- ugCGGUGUCcg-CCGUUGCGcGCUgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.