miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13365 5' -60.3 NC_003409.1 + 7641 0.67 0.625521
Target:  5'- cCGUCGCAGGUGGCAuC-CGaGugGCc -3'
miRNA:   3'- uGCGGUGUCCGCCGUuGcGCgCugCG- -5'
13365 5' -60.3 NC_003409.1 + 14742 1.11 0.000779
Target:  5'- aACGCCACAGGCGGCAACGCGCGACGCa -3'
miRNA:   3'- -UGCGGUGUCCGCCGUUGCGCGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 14894 0.69 0.517443
Target:  5'- uUGCCGCcuGUGGCGuuuGCGUcggccacuacgGCGACGCa -3'
miRNA:   3'- uGCGGUGucCGCCGU---UGCG-----------CGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 14922 0.68 0.595619
Target:  5'- cACGCCA--GGCGcGaCGAUGCGUcGCGCg -3'
miRNA:   3'- -UGCGGUguCCGC-C-GUUGCGCGcUGCG- -5'
13365 5' -60.3 NC_003409.1 + 16803 0.67 0.635507
Target:  5'- gUGCCAgAcuaccuGGCGGCcGCGCGgGGCcaGCg -3'
miRNA:   3'- uGCGGUgU------CCGCCGuUGCGCgCUG--CG- -5'
13365 5' -60.3 NC_003409.1 + 18265 0.66 0.704908
Target:  5'- uCGCCAaaaagugagcacCAGGgGGCGggguuucuaACGUGCGACu- -3'
miRNA:   3'- uGCGGU------------GUCCgCCGU---------UGCGCGCUGcg -5'
13365 5' -60.3 NC_003409.1 + 19286 0.68 0.595619
Target:  5'- cACGUCGCA-GCGGCAAgGCcaGCGGCc- -3'
miRNA:   3'- -UGCGGUGUcCGCCGUUgCG--CGCUGcg -5'
13365 5' -60.3 NC_003409.1 + 19294 0.68 0.60557
Target:  5'- uGCGCCACgugGGGCgGGCAuACGCuGCuguaaacACGCg -3'
miRNA:   3'- -UGCGGUG---UCCG-CCGU-UGCG-CGc------UGCG- -5'
13365 5' -60.3 NC_003409.1 + 20731 0.68 0.585694
Target:  5'- -gGCacuUugGGGCGGCGuACGUG-GACGCg -3'
miRNA:   3'- ugCG---GugUCCGCCGU-UGCGCgCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 23221 0.66 0.685248
Target:  5'- cACGCCGCuAGGUGGgAcCGUgaGCGACu- -3'
miRNA:   3'- -UGCGGUG-UCCGCCgUuGCG--CGCUGcg -5'
13365 5' -60.3 NC_003409.1 + 24212 0.72 0.368275
Target:  5'- uGCGCgCGC-GGCGGC-ACGUGgGACGg -3'
miRNA:   3'- -UGCG-GUGuCCGCCGuUGCGCgCUGCg -5'
13365 5' -60.3 NC_003409.1 + 24365 0.66 0.733937
Target:  5'- gUGCCGCcGcGCGcGCAGUGCGCGAgGg -3'
miRNA:   3'- uGCGGUGuC-CGC-CGUUGCGCGCUgCg -5'
13365 5' -60.3 NC_003409.1 + 26228 0.71 0.417572
Target:  5'- -gGCCACAGGUuaaGGCGACuacgccacuGCGUG-CGCg -3'
miRNA:   3'- ugCGGUGUCCG---CCGUUG---------CGCGCuGCG- -5'
13365 5' -60.3 NC_003409.1 + 27849 0.7 0.489143
Target:  5'- gGCGCCACA----GCGACGC-CGGCGCa -3'
miRNA:   3'- -UGCGGUGUccgcCGUUGCGcGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 27954 0.66 0.733937
Target:  5'- cACGCCGCuAGGUGGgAcCGUG-GGCGa -3'
miRNA:   3'- -UGCGGUG-UCCGCCgUuGCGCgCUGCg -5'
13365 5' -60.3 NC_003409.1 + 31230 0.67 0.655465
Target:  5'- gGCGCCACAcGGUcaguucCAGCaaGCGGCGCc -3'
miRNA:   3'- -UGCGGUGU-CCGcc----GUUGcgCGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 31547 0.7 0.486352
Target:  5'- uCGCCACagcugccuggauauAGGaCGGgGAagcgcaaGCGCGGCGCa -3'
miRNA:   3'- uGCGGUG--------------UCC-GCCgUUg------CGCGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 32119 0.69 0.527022
Target:  5'- uGCGcCCugGGGCGcCGACGCGgcacaGugGCc -3'
miRNA:   3'- -UGC-GGugUCCGCcGUUGCGCg----CugCG- -5'
13365 5' -60.3 NC_003409.1 + 36531 0.68 0.565946
Target:  5'- -aGCCACAGaaGGCGACGUG-GuCGCc -3'
miRNA:   3'- ugCGGUGUCcgCCGUUGCGCgCuGCG- -5'
13365 5' -60.3 NC_003409.1 + 37303 0.71 0.409079
Target:  5'- uCGCCGuuGuCGGCAACGCGCcaGugGCu -3'
miRNA:   3'- uGCGGUguCcGCCGUUGCGCG--CugCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.