miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13365 5' -60.3 NC_003409.1 + 134186 0.66 0.733937
Target:  5'- gUGCCACGGGgGaGCGA-GCGUGuuGUa -3'
miRNA:   3'- uGCGGUGUCCgC-CGUUgCGCGCugCG- -5'
13365 5' -60.3 NC_003409.1 + 132981 0.66 0.675351
Target:  5'- cCGUUGgAGGUacuGCAGCGCGCcGCGCg -3'
miRNA:   3'- uGCGGUgUCCGc--CGUUGCGCGcUGCG- -5'
13365 5' -60.3 NC_003409.1 + 132804 0.79 0.13319
Target:  5'- cACGCgCACAGGCGcGCGGCGCGC--UGCa -3'
miRNA:   3'- -UGCG-GUGUCCGC-CGUUGCGCGcuGCG- -5'
13365 5' -60.3 NC_003409.1 + 131704 0.73 0.323122
Target:  5'- gUGCUGCGGGCGGCcagggacuacCGCuGCGugGCa -3'
miRNA:   3'- uGCGGUGUCCGCCGuu--------GCG-CGCugCG- -5'
13365 5' -60.3 NC_003409.1 + 127291 0.66 0.704908
Target:  5'- uGCGCCugAGGuCGG-GACGgaGCaccGGCGCg -3'
miRNA:   3'- -UGCGGugUCC-GCCgUUGCg-CG---CUGCG- -5'
13365 5' -60.3 NC_003409.1 + 123758 0.67 0.655465
Target:  5'- gGCGCCAUGGGUGcUggUGUGUGugGg -3'
miRNA:   3'- -UGCGGUGUCCGCcGuuGCGCGCugCg -5'
13365 5' -60.3 NC_003409.1 + 123617 0.68 0.585694
Target:  5'- gGCGCCaaaugcaaguGCGGaGCGGCGACG-GUGGCu- -3'
miRNA:   3'- -UGCGG----------UGUC-CGCCGUUGCgCGCUGcg -5'
13365 5' -60.3 NC_003409.1 + 121681 0.69 0.527022
Target:  5'- cGCGCCgggaacacGCAGGUGGCAGCGgaUGUGuuuUGCc -3'
miRNA:   3'- -UGCGG--------UGUCCGCCGUUGC--GCGCu--GCG- -5'
13365 5' -60.3 NC_003409.1 + 120210 0.66 0.704908
Target:  5'- gACGUC-CAGGCGGCuggcacACGgGCcgugaGCGCc -3'
miRNA:   3'- -UGCGGuGUCCGCCGu-----UGCgCGc----UGCG- -5'
13365 5' -60.3 NC_003409.1 + 119989 0.67 0.655465
Target:  5'- -aGCaGCuAGGCGcgacugagagaGCAcGCGCGCGGCGCc -3'
miRNA:   3'- ugCGgUG-UCCGC-----------CGU-UGCGCGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 119802 0.67 0.635507
Target:  5'- gGCGCCGgcgUGGGC-GCcGCGCGCG-UGCu -3'
miRNA:   3'- -UGCGGU---GUCCGcCGuUGCGCGCuGCG- -5'
13365 5' -60.3 NC_003409.1 + 119788 0.66 0.685248
Target:  5'- cACGCCGCuAGGUGGgAcCGUgaGCGACu- -3'
miRNA:   3'- -UGCGGUG-UCCGCCgUuGCG--CGCUGcg -5'
13365 5' -60.3 NC_003409.1 + 118622 0.67 0.635507
Target:  5'- gUGCCGCcGcGCGcGUAAUGCGCGAgGg -3'
miRNA:   3'- uGCGGUGuC-CGC-CGUUGCGCGCUgCg -5'
13365 5' -60.3 NC_003409.1 + 118580 0.66 0.699031
Target:  5'- gGCGCgGCgcaccccaggaacccGGcGCGGCGcACccaggaacccgGCGCGGCGCa -3'
miRNA:   3'- -UGCGgUG---------------UC-CGCCGU-UG-----------CGCGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 118512 0.66 0.708814
Target:  5'- gGCGCgGCgcaccccaggaacccGGcGCGGCGcACcccaggaacccgGCGCGGCGCa -3'
miRNA:   3'- -UGCGgUG---------------UC-CGCCGU-UG------------CGCGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 116573 0.67 0.624523
Target:  5'- cGCGCCcCGGGCGGgaccgacCGAgGCGgGAUGa -3'
miRNA:   3'- -UGCGGuGUCCGCC-------GUUgCGCgCUGCg -5'
13365 5' -60.3 NC_003409.1 + 113947 0.69 0.530873
Target:  5'- -gGCCGCAcagGGUGGUgccgguuuucccaccAACGgcCGCGACGCg -3'
miRNA:   3'- ugCGGUGU---CCGCCG---------------UUGC--GCGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 113590 0.69 0.507933
Target:  5'- cCGUCGCuGGCgcaGGCGAucgccguguUGCGCGugGCu -3'
miRNA:   3'- uGCGGUGuCCG---CCGUU---------GCGCGCugCG- -5'
13365 5' -60.3 NC_003409.1 + 113542 0.73 0.330353
Target:  5'- uCGCCaaACAGGC-GCAGauuUGUGCGGCGCa -3'
miRNA:   3'- uGCGG--UGUCCGcCGUU---GCGCGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 112909 0.69 0.536668
Target:  5'- cUGCuCGCAGGCgGGCAGCacuaCGUGGCGg -3'
miRNA:   3'- uGCG-GUGUCCG-CCGUUGc---GCGCUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.