Results 1 - 20 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13365 | 5' | -60.3 | NC_003409.1 | + | 14742 | 1.11 | 0.000779 |
Target: 5'- aACGCCACAGGCGGCAACGCGCGACGCa -3' miRNA: 3'- -UGCGGUGUCCGCCGUUGCGCGCUGCG- -5' |
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13365 | 5' | -60.3 | NC_003409.1 | + | 109844 | 0.83 | 0.075648 |
Target: 5'- gACGCCGCggcgggAGGCGGUGGCGCcCGGCGCa -3' miRNA: 3'- -UGCGGUG------UCCGCCGUUGCGcGCUGCG- -5' |
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13365 | 5' | -60.3 | NC_003409.1 | + | 132804 | 0.79 | 0.13319 |
Target: 5'- cACGCgCACAGGCGcGCGGCGCGC--UGCa -3' miRNA: 3'- -UGCG-GUGUCCGC-CGUUGCGCGcuGCG- -5' |
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13365 | 5' | -60.3 | NC_003409.1 | + | 85865 | 0.76 | 0.212909 |
Target: 5'- --uCCGCgGGGUGGCGGCaGUGCGACGCa -3' miRNA: 3'- ugcGGUG-UCCGCCGUUG-CGCGCUGCG- -5' |
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13365 | 5' | -60.3 | NC_003409.1 | + | 112054 | 0.74 | 0.275827 |
Target: 5'- gACGCCGCGGaaacuCGGuCAGCGCGCucGCGCg -3' miRNA: 3'- -UGCGGUGUCc----GCC-GUUGCGCGc-UGCG- -5' |
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13365 | 5' | -60.3 | NC_003409.1 | + | 49284 | 0.73 | 0.302143 |
Target: 5'- uACGCCAC-GGUGGCccugccuaGugGgGUGGCGCg -3' miRNA: 3'- -UGCGGUGuCCGCCG--------UugCgCGCUGCG- -5' |
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13365 | 5' | -60.3 | NC_003409.1 | + | 46320 | 0.73 | 0.309018 |
Target: 5'- --cCCGgGGGCGuGCGGCGUGCGugGUg -3' miRNA: 3'- ugcGGUgUCCGC-CGUUGCGCGCugCG- -5' |
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13365 | 5' | -60.3 | NC_003409.1 | + | 131704 | 0.73 | 0.323122 |
Target: 5'- gUGCUGCGGGCGGCcagggacuacCGCuGCGugGCa -3' miRNA: 3'- uGCGGUGUCCGCCGuu--------GCG-CGCugCG- -5' |
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13365 | 5' | -60.3 | NC_003409.1 | + | 93557 | 0.73 | 0.323122 |
Target: 5'- cCGCCaggaaACAGGCGGCGGCaGuCGCcACGCc -3' miRNA: 3'- uGCGG-----UGUCCGCCGUUG-C-GCGcUGCG- -5' |
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13365 | 5' | -60.3 | NC_003409.1 | + | 113542 | 0.73 | 0.330353 |
Target: 5'- uCGCCaaACAGGC-GCAGauuUGUGCGGCGCa -3' miRNA: 3'- uGCGG--UGUCCGcCGUU---GCGCGCUGCG- -5' |
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13365 | 5' | -60.3 | NC_003409.1 | + | 24212 | 0.72 | 0.368275 |
Target: 5'- uGCGCgCGC-GGCGGC-ACGUGgGACGg -3' miRNA: 3'- -UGCG-GUGuCCGCCGuUGCGCgCUGCg -5' |
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13365 | 5' | -60.3 | NC_003409.1 | + | 87175 | 0.71 | 0.392421 |
Target: 5'- uGCGCCgGCGGaG-GGCGugGC-CGACGCg -3' miRNA: 3'- -UGCGG-UGUC-CgCCGUugCGcGCUGCG- -5' |
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13365 | 5' | -60.3 | NC_003409.1 | + | 51599 | 0.71 | 0.392421 |
Target: 5'- -gGCUcCAGG-GGUAugGCGUGAUGCa -3' miRNA: 3'- ugCGGuGUCCgCCGUugCGCGCUGCG- -5' |
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13365 | 5' | -60.3 | NC_003409.1 | + | 87701 | 0.71 | 0.395717 |
Target: 5'- gGCGCCACAgGgauugcucccccaaaGCGGCcaaugugcuCGCGCGugGCu -3' miRNA: 3'- -UGCGGUGU-C---------------CGCCGuu-------GCGCGCugCG- -5' |
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13365 | 5' | -60.3 | NC_003409.1 | + | 37303 | 0.71 | 0.409079 |
Target: 5'- uCGCCGuuGuCGGCAACGCGCcaGugGCu -3' miRNA: 3'- uGCGGUguCcGCCGUUGCGCG--CugCG- -5' |
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13365 | 5' | -60.3 | NC_003409.1 | + | 26228 | 0.71 | 0.417572 |
Target: 5'- -gGCCACAGGUuaaGGCGACuacgccacuGCGUG-CGCg -3' miRNA: 3'- ugCGGUGUCCG---CCGUUG---------CGCGCuGCG- -5' |
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13365 | 5' | -60.3 | NC_003409.1 | + | 95557 | 0.7 | 0.47987 |
Target: 5'- gGCGCCGCuGGGgGGCAGCugGUGacaGAgGCa -3' miRNA: 3'- -UGCGGUG-UCCgCCGUUG--CGCg--CUgCG- -5' |
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13365 | 5' | -60.3 | NC_003409.1 | + | 31547 | 0.7 | 0.486352 |
Target: 5'- uCGCCACagcugccuggauauAGGaCGGgGAagcgcaaGCGCGGCGCa -3' miRNA: 3'- uGCGGUG--------------UCC-GCCgUUg------CGCGCUGCG- -5' |
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13365 | 5' | -60.3 | NC_003409.1 | + | 27849 | 0.7 | 0.489143 |
Target: 5'- gGCGCCACA----GCGACGC-CGGCGCa -3' miRNA: 3'- -UGCGGUGUccgcCGUUGCGcGCUGCG- -5' |
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13365 | 5' | -60.3 | NC_003409.1 | + | 81333 | 0.69 | 0.506986 |
Target: 5'- cCGCCcccaacgGCaAGGC-GCAguACGUGCGGCGCg -3' miRNA: 3'- uGCGG-------UG-UCCGcCGU--UGCGCGCUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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