Results 21 - 40 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13365 | 5' | -60.3 | NC_003409.1 | + | 113590 | 0.69 | 0.507933 |
Target: 5'- cCGUCGCuGGCgcaGGCGAucgccguguUGCGCGugGCu -3' miRNA: 3'- uGCGGUGuCCG---CCGUU---------GCGCGCugCG- -5' |
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13365 | 5' | -60.3 | NC_003409.1 | + | 40797 | 0.69 | 0.517443 |
Target: 5'- -gGCCcCGGGCGGCGGCuCGCcuaAUGCa -3' miRNA: 3'- ugCGGuGUCCGCCGUUGcGCGc--UGCG- -5' |
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13365 | 5' | -60.3 | NC_003409.1 | + | 14894 | 0.69 | 0.517443 |
Target: 5'- uUGCCGCcuGUGGCGuuuGCGUcggccacuacgGCGACGCa -3' miRNA: 3'- uGCGGUGucCGCCGU---UGCG-----------CGCUGCG- -5' |
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13365 | 5' | -60.3 | NC_003409.1 | + | 79697 | 0.69 | 0.526061 |
Target: 5'- -aGCCGCuguuGGagauaauCGGUGGCGCGCG-CGCa -3' miRNA: 3'- ugCGGUGu---CC-------GCCGUUGCGCGCuGCG- -5' |
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13365 | 5' | -60.3 | NC_003409.1 | + | 121681 | 0.69 | 0.527022 |
Target: 5'- cGCGCCgggaacacGCAGGUGGCAGCGgaUGUGuuuUGCc -3' miRNA: 3'- -UGCGG--------UGUCCGCCGUUGC--GCGCu--GCG- -5' |
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13365 | 5' | -60.3 | NC_003409.1 | + | 32119 | 0.69 | 0.527022 |
Target: 5'- uGCGcCCugGGGCGcCGACGCGgcacaGugGCc -3' miRNA: 3'- -UGC-GGugUCCGCcGUUGCGCg----CugCG- -5' |
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13365 | 5' | -60.3 | NC_003409.1 | + | 113947 | 0.69 | 0.530873 |
Target: 5'- -gGCCGCAcagGGUGGUgccgguuuucccaccAACGgcCGCGACGCg -3' miRNA: 3'- ugCGGUGU---CCGCCG---------------UUGC--GCGCUGCG- -5' |
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13365 | 5' | -60.3 | NC_003409.1 | + | 112909 | 0.69 | 0.536668 |
Target: 5'- cUGCuCGCAGGCgGGCAGCacuaCGUGGCGg -3' miRNA: 3'- uGCG-GUGUCCG-CCGUUGc---GCGCUGCg -5' |
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13365 | 5' | -60.3 | NC_003409.1 | + | 109915 | 0.69 | 0.546373 |
Target: 5'- aGCGCCuggucggcCAGGCGcaGgAACGCucugGCGGCGCu -3' miRNA: 3'- -UGCGGu-------GUCCGC--CgUUGCG----CGCUGCG- -5' |
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13365 | 5' | -60.3 | NC_003409.1 | + | 51995 | 0.69 | 0.546373 |
Target: 5'- cACGCCACAGGCcacccccCGUGCGACu- -3' miRNA: 3'- -UGCGGUGUCCGccguu--GCGCGCUGcg -5' |
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13365 | 5' | -60.3 | NC_003409.1 | + | 36531 | 0.68 | 0.565946 |
Target: 5'- -aGCCACAGaaGGCGACGUG-GuCGCc -3' miRNA: 3'- ugCGGUGUCcgCCGUUGCGCgCuGCG- -5' |
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13365 | 5' | -60.3 | NC_003409.1 | + | 110746 | 0.68 | 0.575801 |
Target: 5'- uUGUgAguGGCGGCGugGCgGCGACc- -3' miRNA: 3'- uGCGgUguCCGCCGUugCG-CGCUGcg -5' |
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13365 | 5' | -60.3 | NC_003409.1 | + | 88010 | 0.68 | 0.584703 |
Target: 5'- gACGCCGgGGGauacggGGCAACuagccccucccauGCGCGAUGg -3' miRNA: 3'- -UGCGGUgUCCg-----CCGUUG-------------CGCGCUGCg -5' |
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13365 | 5' | -60.3 | NC_003409.1 | + | 123617 | 0.68 | 0.585694 |
Target: 5'- gGCGCCaaaugcaaguGCGGaGCGGCGACG-GUGGCu- -3' miRNA: 3'- -UGCGG----------UGUC-CGCCGUUGCgCGCUGcg -5' |
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13365 | 5' | -60.3 | NC_003409.1 | + | 20731 | 0.68 | 0.585694 |
Target: 5'- -gGCacuUugGGGCGGCGuACGUG-GACGCg -3' miRNA: 3'- ugCG---GugUCCGCCGU-UGCGCgCUGCG- -5' |
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13365 | 5' | -60.3 | NC_003409.1 | + | 14922 | 0.68 | 0.595619 |
Target: 5'- cACGCCA--GGCGcGaCGAUGCGUcGCGCg -3' miRNA: 3'- -UGCGGUguCCGC-C-GUUGCGCGcUGCG- -5' |
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13365 | 5' | -60.3 | NC_003409.1 | + | 38791 | 0.68 | 0.595619 |
Target: 5'- cCGCguCAGaGCGGaCGAC-UGCGGCGCc -3' miRNA: 3'- uGCGguGUC-CGCC-GUUGcGCGCUGCG- -5' |
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13365 | 5' | -60.3 | NC_003409.1 | + | 19286 | 0.68 | 0.595619 |
Target: 5'- cACGUCGCA-GCGGCAAgGCcaGCGGCc- -3' miRNA: 3'- -UGCGGUGUcCGCCGUUgCG--CGCUGcg -5' |
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13365 | 5' | -60.3 | NC_003409.1 | + | 19294 | 0.68 | 0.60557 |
Target: 5'- uGCGCCACgugGGGCgGGCAuACGCuGCuguaaacACGCg -3' miRNA: 3'- -UGCGGUG---UCCG-CCGU-UGCG-CGc------UGCG- -5' |
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13365 | 5' | -60.3 | NC_003409.1 | + | 73582 | 0.68 | 0.60557 |
Target: 5'- gUGCCGCAGGCaauGCca-GCGCGGgGUa -3' miRNA: 3'- uGCGGUGUCCGc--CGuugCGCGCUgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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