miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13365 5' -60.3 NC_003409.1 + 81333 0.69 0.506986
Target:  5'- cCGCCcccaacgGCaAGGC-GCAguACGUGCGGCGCg -3'
miRNA:   3'- uGCGG-------UG-UCCGcCGU--UGCGCGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 85865 0.76 0.212909
Target:  5'- --uCCGCgGGGUGGCGGCaGUGCGACGCa -3'
miRNA:   3'- ugcGGUG-UCCGCCGUUG-CGCGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 67796 0.66 0.704908
Target:  5'- gACGaUCGCGGuGgGuGCGGCGCGCagggGGCGCc -3'
miRNA:   3'- -UGC-GGUGUC-CgC-CGUUGCGCG----CUGCG- -5'
13365 5' -60.3 NC_003409.1 + 36531 0.68 0.565946
Target:  5'- -aGCCACAGaaGGCGACGUG-GuCGCc -3'
miRNA:   3'- ugCGGUGUCcgCCGUUGCGCgCuGCG- -5'
13365 5' -60.3 NC_003409.1 + 132804 0.79 0.13319
Target:  5'- cACGCgCACAGGCGcGCGGCGCGC--UGCa -3'
miRNA:   3'- -UGCG-GUGUCCGC-CGUUGCGCGcuGCG- -5'
13365 5' -60.3 NC_003409.1 + 23221 0.66 0.685248
Target:  5'- cACGCCGCuAGGUGGgAcCGUgaGCGACu- -3'
miRNA:   3'- -UGCGGUG-UCCGCCgUuGCG--CGCUGcg -5'
13365 5' -60.3 NC_003409.1 + 109844 0.83 0.075648
Target:  5'- gACGCCGCggcgggAGGCGGUGGCGCcCGGCGCa -3'
miRNA:   3'- -UGCGGUG------UCCGCCGUUGCGcGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 14742 1.11 0.000779
Target:  5'- aACGCCACAGGCGGCAACGCGCGACGCa -3'
miRNA:   3'- -UGCGGUGUCCGCCGUUGCGCGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 123617 0.68 0.585694
Target:  5'- gGCGCCaaaugcaaguGCGGaGCGGCGACG-GUGGCu- -3'
miRNA:   3'- -UGCGG----------UGUC-CGCCGUUGCgCGCUGcg -5'
13365 5' -60.3 NC_003409.1 + 108122 0.66 0.714654
Target:  5'- cGCGCCGCagAGGCccagagaaaaGCAuCGCGCGaggaaacccaGCGCa -3'
miRNA:   3'- -UGCGGUG--UCCGc---------CGUuGCGCGC----------UGCG- -5'
13365 5' -60.3 NC_003409.1 + 87175 0.71 0.392421
Target:  5'- uGCGCCgGCGGaG-GGCGugGC-CGACGCg -3'
miRNA:   3'- -UGCGG-UGUC-CgCCGUugCGcGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 112054 0.74 0.275827
Target:  5'- gACGCCGCGGaaacuCGGuCAGCGCGCucGCGCg -3'
miRNA:   3'- -UGCGGUGUCc----GCC-GUUGCGCGc-UGCG- -5'
13365 5' -60.3 NC_003409.1 + 119802 0.67 0.635507
Target:  5'- gGCGCCGgcgUGGGC-GCcGCGCGCG-UGCu -3'
miRNA:   3'- -UGCGGU---GUCCGcCGuUGCGCGCuGCG- -5'
13365 5' -60.3 NC_003409.1 + 18265 0.66 0.704908
Target:  5'- uCGCCAaaaagugagcacCAGGgGGCGggguuucuaACGUGCGACu- -3'
miRNA:   3'- uGCGGU------------GUCCgCCGU---------UGCGCGCUGcg -5'
13365 5' -60.3 NC_003409.1 + 83820 0.67 0.665421
Target:  5'- gGCuCCACGuGGCGGaagGugGCGCGGgGUu -3'
miRNA:   3'- -UGcGGUGU-CCGCCg--UugCGCGCUgCG- -5'
13365 5' -60.3 NC_003409.1 + 132981 0.66 0.675351
Target:  5'- cCGUUGgAGGUacuGCAGCGCGCcGCGCg -3'
miRNA:   3'- uGCGGUgUCCGc--CGUUGCGCGcUGCG- -5'
13365 5' -60.3 NC_003409.1 + 88010 0.68 0.584703
Target:  5'- gACGCCGgGGGauacggGGCAACuagccccucccauGCGCGAUGg -3'
miRNA:   3'- -UGCGGUgUCCg-----CCGUUG-------------CGCGCUGCg -5'
13365 5' -60.3 NC_003409.1 + 118512 0.66 0.708814
Target:  5'- gGCGCgGCgcaccccaggaacccGGcGCGGCGcACcccaggaacccgGCGCGGCGCa -3'
miRNA:   3'- -UGCGgUG---------------UC-CGCCGU-UG------------CGCGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 38791 0.68 0.595619
Target:  5'- cCGCguCAGaGCGGaCGAC-UGCGGCGCc -3'
miRNA:   3'- uGCGguGUC-CGCC-GUUGcGCGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 20731 0.68 0.585694
Target:  5'- -gGCacuUugGGGCGGCGuACGUG-GACGCg -3'
miRNA:   3'- ugCG---GugUCCGCCGU-UGCGCgCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.