miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13365 5' -60.3 NC_003409.1 + 14742 1.11 0.000779
Target:  5'- aACGCCACAGGCGGCAACGCGCGACGCa -3'
miRNA:   3'- -UGCGGUGUCCGCCGUUGCGCGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 36531 0.68 0.565946
Target:  5'- -aGCCACAGaaGGCGACGUG-GuCGCc -3'
miRNA:   3'- ugCGGUGUCcgCCGUUGCGCgCuGCG- -5'
13365 5' -60.3 NC_003409.1 + 19286 0.68 0.595619
Target:  5'- cACGUCGCA-GCGGCAAgGCcaGCGGCc- -3'
miRNA:   3'- -UGCGGUGUcCGCCGUUgCG--CGCUGcg -5'
13365 5' -60.3 NC_003409.1 + 27954 0.66 0.733937
Target:  5'- cACGCCGCuAGGUGGgAcCGUG-GGCGa -3'
miRNA:   3'- -UGCGGUG-UCCGCCgUuGCGCgCUGCg -5'
13365 5' -60.3 NC_003409.1 + 112054 0.74 0.275827
Target:  5'- gACGCCGCGGaaacuCGGuCAGCGCGCucGCGCg -3'
miRNA:   3'- -UGCGGUGUCc----GCC-GUUGCGCGc-UGCG- -5'
13365 5' -60.3 NC_003409.1 + 46320 0.73 0.309018
Target:  5'- --cCCGgGGGCGuGCGGCGUGCGugGUg -3'
miRNA:   3'- ugcGGUgUCCGC-CGUUGCGCGCugCG- -5'
13365 5' -60.3 NC_003409.1 + 87175 0.71 0.392421
Target:  5'- uGCGCCgGCGGaG-GGCGugGC-CGACGCg -3'
miRNA:   3'- -UGCGG-UGUC-CgCCGUugCGcGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 26228 0.71 0.417572
Target:  5'- -gGCCACAGGUuaaGGCGACuacgccacuGCGUG-CGCg -3'
miRNA:   3'- ugCGGUGUCCG---CCGUUG---------CGCGCuGCG- -5'
13365 5' -60.3 NC_003409.1 + 40797 0.69 0.517443
Target:  5'- -gGCCcCGGGCGGCGGCuCGCcuaAUGCa -3'
miRNA:   3'- ugCGGuGUCCGCCGUUGcGCGc--UGCG- -5'
13365 5' -60.3 NC_003409.1 + 109915 0.69 0.546373
Target:  5'- aGCGCCuggucggcCAGGCGcaGgAACGCucugGCGGCGCu -3'
miRNA:   3'- -UGCGGu-------GUCCGC--CgUUGCG----CGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 121681 0.69 0.527022
Target:  5'- cGCGCCgggaacacGCAGGUGGCAGCGgaUGUGuuuUGCc -3'
miRNA:   3'- -UGCGG--------UGUCCGCCGUUGC--GCGCu--GCG- -5'
13365 5' -60.3 NC_003409.1 + 81333 0.69 0.506986
Target:  5'- cCGCCcccaacgGCaAGGC-GCAguACGUGCGGCGCg -3'
miRNA:   3'- uGCGG-------UG-UCCGcCGU--UGCGCGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 109844 0.83 0.075648
Target:  5'- gACGCCGCggcgggAGGCGGUGGCGCcCGGCGCa -3'
miRNA:   3'- -UGCGGUG------UCCGCCGUUGCGcGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 112909 0.69 0.536668
Target:  5'- cUGCuCGCAGGCgGGCAGCacuaCGUGGCGg -3'
miRNA:   3'- uGCG-GUGUCCG-CCGUUGc---GCGCUGCg -5'
13365 5' -60.3 NC_003409.1 + 132804 0.79 0.13319
Target:  5'- cACGCgCACAGGCGcGCGGCGCGC--UGCa -3'
miRNA:   3'- -UGCG-GUGUCCGC-CGUUGCGCGcuGCG- -5'
13365 5' -60.3 NC_003409.1 + 95557 0.7 0.47987
Target:  5'- gGCGCCGCuGGGgGGCAGCugGUGacaGAgGCa -3'
miRNA:   3'- -UGCGGUG-UCCgCCGUUG--CGCg--CUgCG- -5'
13365 5' -60.3 NC_003409.1 + 51995 0.69 0.546373
Target:  5'- cACGCCACAGGCcacccccCGUGCGACu- -3'
miRNA:   3'- -UGCGGUGUCCGccguu--GCGCGCUGcg -5'
13365 5' -60.3 NC_003409.1 + 123617 0.68 0.585694
Target:  5'- gGCGCCaaaugcaaguGCGGaGCGGCGACG-GUGGCu- -3'
miRNA:   3'- -UGCGG----------UGUC-CGCCGUUGCgCGCUGcg -5'
13365 5' -60.3 NC_003409.1 + 85865 0.76 0.212909
Target:  5'- --uCCGCgGGGUGGCGGCaGUGCGACGCa -3'
miRNA:   3'- ugcGGUG-UCCGCCGUUG-CGCGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 24212 0.72 0.368275
Target:  5'- uGCGCgCGC-GGCGGC-ACGUGgGACGg -3'
miRNA:   3'- -UGCG-GUGuCCGCCGuUGCGCgCUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.