Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13367 | 3' | -56.6 | NC_003409.1 | + | 88689 | 0.66 | 0.883187 |
Target: 5'- -----cCGGCAgGCagGGGCGCGGgGGc -3' miRNA: 3'- ucauuuGCUGU-CGagCCCGCGCCgCU- -5' |
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13367 | 3' | -56.6 | NC_003409.1 | + | 89376 | 0.72 | 0.545114 |
Target: 5'- uGGgagAGAgGACAGCUUaagGGGCGUGGUGu -3' miRNA: 3'- -UCa--UUUgCUGUCGAG---CCCGCGCCGCu -5' |
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13367 | 3' | -56.6 | NC_003409.1 | + | 91880 | 0.66 | 0.87609 |
Target: 5'- uAGUAGGCccauGugGGCUUGGGaGUGGCc- -3' miRNA: 3'- -UCAUUUG----CugUCGAGCCCgCGCCGcu -5' |
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13367 | 3' | -56.6 | NC_003409.1 | + | 93360 | 0.68 | 0.765374 |
Target: 5'- --gAAACuuCAGCUgcggaggauguugUGGGCGUGGCGAc -3' miRNA: 3'- ucaUUUGcuGUCGA-------------GCCCGCGCCGCU- -5' |
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13367 | 3' | -56.6 | NC_003409.1 | + | 104818 | 0.68 | 0.766321 |
Target: 5'- cGGUAAcaaaggacGCGGCGGaaagaCGGGaCGUGGCGGa -3' miRNA: 3'- -UCAUU--------UGCUGUCga---GCCC-GCGCCGCU- -5' |
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13367 | 3' | -56.6 | NC_003409.1 | + | 113232 | 0.68 | 0.772915 |
Target: 5'- cGGUGuggcuGCGACcgaagacgguaacgGGCUCGGGauaGgGGCGGc -3' miRNA: 3'- -UCAUu----UGCUG--------------UCGAGCCCg--CgCCGCU- -5' |
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13367 | 3' | -56.6 | NC_003409.1 | + | 114394 | 0.66 | 0.845572 |
Target: 5'- ---uGGCGACAGCg-GGGUGgGGCu- -3' miRNA: 3'- ucauUUGCUGUCGagCCCGCgCCGcu -5' |
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13367 | 3' | -56.6 | NC_003409.1 | + | 115766 | 0.66 | 0.883187 |
Target: 5'- ----uGCGAuCAGUcgaGGGCGCGGCu- -3' miRNA: 3'- ucauuUGCU-GUCGag-CCCGCGCCGcu -5' |
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13367 | 3' | -56.6 | NC_003409.1 | + | 133028 | 0.75 | 0.404698 |
Target: 5'- cGGUGGugG-CAGagUCGGGCGCGGUGc -3' miRNA: 3'- -UCAUUugCuGUCg-AGCCCGCGCCGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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