miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1337 3' -55.6 NC_001335.1 + 6066 0.66 0.697294
Target:  5'- cUUCGcGCUGGcCGGCUACucgcaGGGAGCc -3'
miRNA:   3'- aAAGC-UGGCU-GCCGGUGuag--CCCUUG- -5'
1337 3' -55.6 NC_001335.1 + 47180 0.66 0.697294
Target:  5'- --cCGACgCGGucUGGCC-CGaacUCGGGAGCg -3'
miRNA:   3'- aaaGCUG-GCU--GCCGGuGU---AGCCCUUG- -5'
1337 3' -55.6 NC_001335.1 + 39941 0.66 0.686375
Target:  5'- -gUCG-CaCGACGGCCuGCAgUGGGAGg -3'
miRNA:   3'- aaAGCuG-GCUGCCGG-UGUaGCCCUUg -5'
1337 3' -55.6 NC_001335.1 + 22689 0.66 0.675404
Target:  5'- --cCGuGCCGACGGCCACcaacugGUCuGGAu- -3'
miRNA:   3'- aaaGC-UGGCUGCCGGUG------UAGcCCUug -5'
1337 3' -55.6 NC_001335.1 + 47547 0.66 0.675404
Target:  5'- ---aGGgCGGUGGCCACAUC-GGAGCu -3'
miRNA:   3'- aaagCUgGCUGCCGGUGUAGcCCUUG- -5'
1337 3' -55.6 NC_001335.1 + 17141 0.66 0.664391
Target:  5'- --aUGAgCGACGGCaGCAUCGGcuggaGAGCc -3'
miRNA:   3'- aaaGCUgGCUGCCGgUGUAGCC-----CUUG- -5'
1337 3' -55.6 NC_001335.1 + 36253 0.66 0.653348
Target:  5'- -gUCGACCGAgaacCGGCCuccgacaAUC-GGAACa -3'
miRNA:   3'- aaAGCUGGCU----GCCGGug-----UAGcCCUUG- -5'
1337 3' -55.6 NC_001335.1 + 16075 0.66 0.653348
Target:  5'- -cUUG-UCGACGGUUACGUCGaccGGGACg -3'
miRNA:   3'- aaAGCuGGCUGCCGGUGUAGC---CCUUG- -5'
1337 3' -55.6 NC_001335.1 + 3552 0.67 0.631212
Target:  5'- --cCGGcuCCGACGGCUGCGUCcaGAGCg -3'
miRNA:   3'- aaaGCU--GGCUGCCGGUGUAGccCUUG- -5'
1337 3' -55.6 NC_001335.1 + 20021 0.67 0.62014
Target:  5'- --gUGACCGGugaguuguCGGCCAgGaaCGGGAACg -3'
miRNA:   3'- aaaGCUGGCU--------GCCGGUgUa-GCCCUUG- -5'
1337 3' -55.6 NC_001335.1 + 9663 0.67 0.587027
Target:  5'- -gUCGGCCu-UGGCCGCGUaggUGGGAGu -3'
miRNA:   3'- aaAGCUGGcuGCCGGUGUA---GCCCUUg -5'
1337 3' -55.6 NC_001335.1 + 29799 0.67 0.587027
Target:  5'- --gCGACCGAC--UCACGUCGGGcACc -3'
miRNA:   3'- aaaGCUGGCUGccGGUGUAGCCCuUG- -5'
1337 3' -55.6 NC_001335.1 + 2177 0.67 0.576054
Target:  5'- --cCGGCUGuCGGCCACGaaGuGGGGCg -3'
miRNA:   3'- aaaGCUGGCuGCCGGUGUagC-CCUUG- -5'
1337 3' -55.6 NC_001335.1 + 20257 0.68 0.565127
Target:  5'- --cCGG-CGACGGCCAgGUCGaGGGCg -3'
miRNA:   3'- aaaGCUgGCUGCCGGUgUAGCcCUUG- -5'
1337 3' -55.6 NC_001335.1 + 29043 0.68 0.554256
Target:  5'- --cUGGCCGcaACGGCUACAUCGucAACg -3'
miRNA:   3'- aaaGCUGGC--UGCCGGUGUAGCccUUG- -5'
1337 3' -55.6 NC_001335.1 + 17605 0.68 0.554256
Target:  5'- ---aGGCCGAUGGCCAUcagGUUGGcGAGa -3'
miRNA:   3'- aaagCUGGCUGCCGGUG---UAGCC-CUUg -5'
1337 3' -55.6 NC_001335.1 + 29014 0.68 0.522046
Target:  5'- -aUgGGCCGGCGGCUGC--CGGuGGACa -3'
miRNA:   3'- aaAgCUGGCUGCCGGUGuaGCC-CUUG- -5'
1337 3' -55.6 NC_001335.1 + 40696 0.69 0.511467
Target:  5'- --aCG-CCGAC-GUCGCAUCGGaGAACg -3'
miRNA:   3'- aaaGCuGGCUGcCGGUGUAGCC-CUUG- -5'
1337 3' -55.6 NC_001335.1 + 11582 0.69 0.490586
Target:  5'- cUUCuGGCCGGuCGuGCC-CAUCGGGAu- -3'
miRNA:   3'- aAAG-CUGGCU-GC-CGGuGUAGCCCUug -5'
1337 3' -55.6 NC_001335.1 + 15125 0.69 0.490586
Target:  5'- cUUCaGCuCGACGGUCACAUCGucGGACa -3'
miRNA:   3'- aAAGcUG-GCUGCCGGUGUAGCc-CUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.