miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13372 5' -55 NC_003409.1 + 111346 0.65 0.94377
Target:  5'- uGAcgGGUGCgGCcCGCUUuucUGCGGGGGGg -3'
miRNA:   3'- gCU--UCGCGaUGcGCGAA---GCGCUCUCC- -5'
13372 5' -55 NC_003409.1 + 78809 0.65 0.94377
Target:  5'- cCGGcuGGCGCguaACG-GCaggCGUGAGAGGc -3'
miRNA:   3'- -GCU--UCGCGa--UGCgCGaa-GCGCUCUCC- -5'
13372 5' -55 NC_003409.1 + 127275 0.66 0.939134
Target:  5'- aCGGAGCaCcgGCGCGCccUUaaCGAGAGGa -3'
miRNA:   3'- -GCUUCGcGa-UGCGCG--AAgcGCUCUCC- -5'
13372 5' -55 NC_003409.1 + 27093 0.66 0.934258
Target:  5'- aGAAGCGCaccacagaaACGC-CUgucguaCGCGGGGGGu -3'
miRNA:   3'- gCUUCGCGa--------UGCGcGAa-----GCGCUCUCC- -5'
13372 5' -55 NC_003409.1 + 82922 0.66 0.923787
Target:  5'- gGAGGCcugcaaacGCUugGgGCuUUCGUG-GAGGa -3'
miRNA:   3'- gCUUCG--------CGAugCgCG-AAGCGCuCUCC- -5'
13372 5' -55 NC_003409.1 + 90532 0.67 0.906279
Target:  5'- gGggGgGCUGCGaguCGCUaugaCGCGucGAGGg -3'
miRNA:   3'- gCuuCgCGAUGC---GCGAa---GCGCu-CUCC- -5'
13372 5' -55 NC_003409.1 + 123633 0.67 0.906279
Target:  5'- gCGGAGCgGCgACGgugGCUUCuaGGGAGGa -3'
miRNA:   3'- -GCUUCG-CGaUGCg--CGAAGcgCUCUCC- -5'
13372 5' -55 NC_003409.1 + 75492 0.67 0.899967
Target:  5'- gGcuGUGCUGgGCGUUgaacgCGCgGGGAGGg -3'
miRNA:   3'- gCuuCGCGAUgCGCGAa----GCG-CUCUCC- -5'
13372 5' -55 NC_003409.1 + 67797 0.67 0.899967
Target:  5'- aCGAucGCGgUGgGUGCggCGCGcAGGGGg -3'
miRNA:   3'- -GCUu-CGCgAUgCGCGaaGCGC-UCUCC- -5'
13372 5' -55 NC_003409.1 + 65514 0.68 0.879645
Target:  5'- aGGAGU-CUGaaaGCGCUUUGaGAGAGGg -3'
miRNA:   3'- gCUUCGcGAUg--CGCGAAGCgCUCUCC- -5'
13372 5' -55 NC_003409.1 + 40948 0.68 0.85733
Target:  5'- uCGAuGCGC-GCGUGCUggucCGUGAGAauGGg -3'
miRNA:   3'- -GCUuCGCGaUGCGCGAa---GCGCUCU--CC- -5'
13372 5' -55 NC_003409.1 + 25580 0.69 0.807362
Target:  5'- -aAAGCcCUACGUGUg-CGCGGGGGGg -3'
miRNA:   3'- gcUUCGcGAUGCGCGaaGCGCUCUCC- -5'
13372 5' -55 NC_003409.1 + 118620 0.72 0.661595
Target:  5'- cCGugcCGCcGCGCGCguaaugCGCGAGGGGg -3'
miRNA:   3'- -GCuucGCGaUGCGCGaa----GCGCUCUCC- -5'
13372 5' -55 NC_003409.1 + 24367 0.72 0.641088
Target:  5'- aCGugcCGCcGCGCGCgcagugCGCGAGGGGg -3'
miRNA:   3'- -GCuucGCGaUGCGCGaa----GCGCUCUCC- -5'
13372 5' -55 NC_003409.1 + 31519 0.73 0.610294
Target:  5'- gGAAGCGCaa-GCGCggCGC-AGAGGa -3'
miRNA:   3'- gCUUCGCGaugCGCGaaGCGcUCUCC- -5'
13372 5' -55 NC_003409.1 + 22344 0.78 0.358217
Target:  5'- gCGAAGCGCguaGCGCUUCGCGccGGuaaAGGg -3'
miRNA:   3'- -GCUUCGCGaugCGCGAAGCGC--UC---UCC- -5'
13372 5' -55 NC_003409.1 + 22187 1.1 0.002994
Target:  5'- gCGAAGCGCUACGCGCUUCGCGAGAGGu -3'
miRNA:   3'- -GCUUCGCGAUGCGCGAAGCGCUCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.