miRNA display CGI


Results 1 - 20 of 27 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13373 5' -55 NC_003409.1 + 13991 0.66 0.887745
Target:  5'- cGCgAGCCaCCGGGaacUGUGCGaaCGCAGCGu -3'
miRNA:   3'- uCG-UCGG-GGUUU---ACACGC--GCGUUGUg -5'
13373 5' -55 NC_003409.1 + 21746 0.69 0.758512
Target:  5'- aAGCGuGUCgCCAGGUGUGUGC-CGACAa -3'
miRNA:   3'- -UCGU-CGG-GGUUUACACGCGcGUUGUg -5'
13373 5' -55 NC_003409.1 + 22463 1.09 0.002543
Target:  5'- gAGCAGCCCCAAAUGUGCGCGCAACACc -3'
miRNA:   3'- -UCGUCGGGGUUUACACGCGCGUUGUG- -5'
13373 5' -55 NC_003409.1 + 24191 0.74 0.476064
Target:  5'- cAGCAGCCCCcccucgcgcacUGcGCGCGCGGCGg -3'
miRNA:   3'- -UCGUCGGGGuuu--------ACaCGCGCGUUGUg -5'
13373 5' -55 NC_003409.1 + 25576 0.69 0.747591
Target:  5'- gGGUaaAGCCCUAcGUGUGCGCGgGgggggggguguauACGCu -3'
miRNA:   3'- -UCG--UCGGGGUuUACACGCGCgU-------------UGUG- -5'
13373 5' -55 NC_003409.1 + 26759 0.67 0.841263
Target:  5'- aGGCAGCUCCGGAcaaguUGUccaaaacacgGCGCGCccCGCc -3'
miRNA:   3'- -UCGUCGGGGUUU-----ACA----------CGCGCGuuGUG- -5'
13373 5' -55 NC_003409.1 + 39570 0.71 0.623882
Target:  5'- uGUAGCCCCAAAgaccGUcaaaGCGCcGCAugGCu -3'
miRNA:   3'- uCGUCGGGGUUUa---CA----CGCG-CGUugUG- -5'
13373 5' -55 NC_003409.1 + 39661 0.77 0.330413
Target:  5'- -cCAGCCCCA--UGcUGCGCaGCAACACg -3'
miRNA:   3'- ucGUCGGGGUuuAC-ACGCG-CGUUGUG- -5'
13373 5' -55 NC_003409.1 + 47464 0.68 0.82407
Target:  5'- uAGCGuGCCCCAGu--UGC-UGCGGCACg -3'
miRNA:   3'- -UCGU-CGGGGUUuacACGcGCGUUGUG- -5'
13373 5' -55 NC_003409.1 + 49277 0.68 0.796907
Target:  5'- cGGUGGCCCUgccuAGUGgggugGCGCGCcACAg -3'
miRNA:   3'- -UCGUCGGGGu---UUACa----CGCGCGuUGUg -5'
13373 5' -55 NC_003409.1 + 52085 0.66 0.887745
Target:  5'- cGGguGCuCCCuacuAUGUGUGUGUuuacgAACGCg -3'
miRNA:   3'- -UCguCG-GGGuu--UACACGCGCG-----UUGUG- -5'
13373 5' -55 NC_003409.1 + 52148 0.67 0.841263
Target:  5'- gGGUGGCCUguGgcGUGUGCGCGCuGGCc- -3'
miRNA:   3'- -UCGUCGGGguU--UACACGCGCG-UUGug -5'
13373 5' -55 NC_003409.1 + 67967 0.67 0.832764
Target:  5'- uGGC-GCCCCc----UGCGCGCcGCACc -3'
miRNA:   3'- -UCGuCGGGGuuuacACGCGCGuUGUG- -5'
13373 5' -55 NC_003409.1 + 81528 0.68 0.81519
Target:  5'- gAGCAGUUCgCGAAgcguaaagGCGCGCcGCACg -3'
miRNA:   3'- -UCGUCGGG-GUUUaca-----CGCGCGuUGUG- -5'
13373 5' -55 NC_003409.1 + 87677 0.69 0.74859
Target:  5'- aAGCGGCCa---AUGUGCucGCGCGugGCu -3'
miRNA:   3'- -UCGUCGGgguuUACACG--CGCGUugUG- -5'
13373 5' -55 NC_003409.1 + 91638 0.67 0.849559
Target:  5'- gGGCAGCaucacCCCAGAUGUucuuGCcaGCGCuggaGGCACg -3'
miRNA:   3'- -UCGUCG-----GGGUUUACA----CG--CGCG----UUGUG- -5'
13373 5' -55 NC_003409.1 + 96857 0.72 0.581732
Target:  5'- aGGCAGUCuaucgucuCCAgaucacccAGUGUGCGCGCAGCu- -3'
miRNA:   3'- -UCGUCGG--------GGU--------UUACACGCGCGUUGug -5'
13373 5' -55 NC_003409.1 + 97096 0.65 0.907816
Target:  5'- uGGCGGCCUUg---GUGUGCaGCAGCuCg -3'
miRNA:   3'- -UCGUCGGGGuuuaCACGCG-CGUUGuG- -5'
13373 5' -55 NC_003409.1 + 106307 0.69 0.76734
Target:  5'- cAGguGCUCCAcgAGcGUGCGCaguuugagguccgGCAGCACu -3'
miRNA:   3'- -UCguCGGGGU--UUaCACGCG-------------CGUUGUG- -5'
13373 5' -55 NC_003409.1 + 107862 0.71 0.613314
Target:  5'- cGGCAGCCCU--AUG-GUGCGCAAgAa -3'
miRNA:   3'- -UCGUCGGGGuuUACaCGCGCGUUgUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.