miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13373 5' -55 NC_003409.1 + 25576 0.69 0.747591
Target:  5'- gGGUaaAGCCCUAcGUGUGCGCGgGgggggggguguauACGCu -3'
miRNA:   3'- -UCG--UCGGGGUuUACACGCGCgU-------------UGUG- -5'
13373 5' -55 NC_003409.1 + 39661 0.77 0.330413
Target:  5'- -cCAGCCCCA--UGcUGCGCaGCAACACg -3'
miRNA:   3'- ucGUCGGGGUuuAC-ACGCG-CGUUGUG- -5'
13373 5' -55 NC_003409.1 + 22463 1.09 0.002543
Target:  5'- gAGCAGCCCCAAAUGUGCGCGCAACACc -3'
miRNA:   3'- -UCGUCGGGGUUUACACGCGCGUUGUG- -5'
13373 5' -55 NC_003409.1 + 97096 0.65 0.907816
Target:  5'- uGGCGGCCUUg---GUGUGCaGCAGCuCg -3'
miRNA:   3'- -UCGUCGGGGuuuaCACGCG-CGUUGuG- -5'
13373 5' -55 NC_003409.1 + 52085 0.66 0.887745
Target:  5'- cGGguGCuCCCuacuAUGUGUGUGUuuacgAACGCg -3'
miRNA:   3'- -UCguCG-GGGuu--UACACGCGCG-----UUGUG- -5'
13373 5' -55 NC_003409.1 + 24191 0.74 0.476064
Target:  5'- cAGCAGCCCCcccucgcgcacUGcGCGCGCGGCGg -3'
miRNA:   3'- -UCGUCGGGGuuu--------ACaCGCGCGUUGUg -5'
13373 5' -55 NC_003409.1 + 13991 0.66 0.887745
Target:  5'- cGCgAGCCaCCGGGaacUGUGCGaaCGCAGCGu -3'
miRNA:   3'- uCG-UCGG-GGUUU---ACACGC--GCGUUGUg -5'
13373 5' -55 NC_003409.1 + 26759 0.67 0.841263
Target:  5'- aGGCAGCUCCGGAcaaguUGUccaaaacacgGCGCGCccCGCc -3'
miRNA:   3'- -UCGUCGGGGUUU-----ACA----------CGCGCGuuGUG- -5'
13373 5' -55 NC_003409.1 + 131517 0.67 0.849559
Target:  5'- cGguGCCCaguGGGUGUGCcaCGCAGCGg -3'
miRNA:   3'- uCguCGGGg--UUUACACGc-GCGUUGUg -5'
13373 5' -55 NC_003409.1 + 49277 0.68 0.796907
Target:  5'- cGGUGGCCCUgccuAGUGgggugGCGCGCcACAg -3'
miRNA:   3'- -UCGUCGGGGu---UUACa----CGCGCGuUGUg -5'
13373 5' -55 NC_003409.1 + 52148 0.67 0.841263
Target:  5'- gGGUGGCCUguGgcGUGUGCGCGCuGGCc- -3'
miRNA:   3'- -UCGUCGGGguU--UACACGCGCG-UUGug -5'
13373 5' -55 NC_003409.1 + 115950 0.72 0.560858
Target:  5'- uGGguGCCuCUggGUGUGC-CGCAAgGCa -3'
miRNA:   3'- -UCguCGG-GGuuUACACGcGCGUUgUG- -5'
13373 5' -55 NC_003409.1 + 47464 0.68 0.82407
Target:  5'- uAGCGuGCCCCAGu--UGC-UGCGGCACg -3'
miRNA:   3'- -UCGU-CGGGGUUuacACGcGCGUUGUG- -5'
13373 5' -55 NC_003409.1 + 39570 0.71 0.623882
Target:  5'- uGUAGCCCCAAAgaccGUcaaaGCGCcGCAugGCu -3'
miRNA:   3'- uCGUCGGGGUUUa---CA----CGCG-CGUugUG- -5'
13373 5' -55 NC_003409.1 + 117726 0.7 0.686074
Target:  5'- aGGguGCCCUGguugacacAAUGUGcCGCGCAucaaccaGCGCg -3'
miRNA:   3'- -UCguCGGGGU--------UUACAC-GCGCGU-------UGUG- -5'
13373 5' -55 NC_003409.1 + 87677 0.69 0.74859
Target:  5'- aAGCGGCCa---AUGUGCucGCGCGugGCu -3'
miRNA:   3'- -UCGUCGGgguuUACACG--CGCGUugUG- -5'
13373 5' -55 NC_003409.1 + 131731 0.69 0.752572
Target:  5'- gAGguGCCCCAGguacacuugucagagGUGcUGCGgGCGGC-Ca -3'
miRNA:   3'- -UCguCGGGGUU---------------UAC-ACGCgCGUUGuG- -5'
13373 5' -55 NC_003409.1 + 81528 0.68 0.81519
Target:  5'- gAGCAGUUCgCGAAgcguaaagGCGCGCcGCACg -3'
miRNA:   3'- -UCGUCGGG-GUUUaca-----CGCGCGuUGUG- -5'
13373 5' -55 NC_003409.1 + 106307 0.69 0.76734
Target:  5'- cAGguGCUCCAcgAGcGUGCGCaguuugagguccgGCAGCACu -3'
miRNA:   3'- -UCguCGGGGU--UUaCACGCG-------------CGUUGUG- -5'
13373 5' -55 NC_003409.1 + 115882 0.69 0.768315
Target:  5'- cGUAGCCCCAGGguUGgGUGCAucagACAUg -3'
miRNA:   3'- uCGUCGGGGUUUacACgCGCGU----UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.