miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13377 3' -49.1 NC_003409.1 + 47267 0.66 0.997237
Target:  5'- aGGCugUCCGGGCGAaccuccUCCAGGACAg -3'
miRNA:   3'- gUCG--AGGCCUGUUcaac--AGGUUUUGU- -5'
13377 3' -49.1 NC_003409.1 + 42589 0.66 0.997188
Target:  5'- uCAGCUCUgccugcaGGuGCGAGUUGguggCCAGAcaGCAg -3'
miRNA:   3'- -GUCGAGG-------CC-UGUUCAACa---GGUUU--UGU- -5'
13377 3' -49.1 NC_003409.1 + 7088 0.66 0.996719
Target:  5'- -cGCUCCGGuugcuuguuGCAuGUugUGUCCAAAuGCAg -3'
miRNA:   3'- guCGAGGCC---------UGUuCA--ACAGGUUU-UGU- -5'
13377 3' -49.1 NC_003409.1 + 68194 0.66 0.996124
Target:  5'- gCAGUUCaaCGGACAcggcGgaGUCCGAGGCGu -3'
miRNA:   3'- -GUCGAG--GCCUGUu---CaaCAGGUUUUGU- -5'
13377 3' -49.1 NC_003409.1 + 107050 0.66 0.996124
Target:  5'- aAGggCCGGAuccuuuuuuucCAGGgcGUCCAGGGCAu -3'
miRNA:   3'- gUCgaGGCCU-----------GUUCaaCAGGUUUUGU- -5'
13377 3' -49.1 NC_003409.1 + 111568 0.66 0.996124
Target:  5'- gAGCUgUGGGCAgAGgaaUGUCCGGuGCAg -3'
miRNA:   3'- gUCGAgGCCUGU-UCa--ACAGGUUuUGU- -5'
13377 3' -49.1 NC_003409.1 + 81322 0.67 0.993788
Target:  5'- cCAGCUCCGGAuCAAGcUuuaucguccUGUUUAGAAUg -3'
miRNA:   3'- -GUCGAGGCCU-GUUC-A---------ACAGGUUUUGu -5'
13377 3' -49.1 NC_003409.1 + 54843 0.67 0.991682
Target:  5'- aAGgUCCaGGGCAAGUUGUacgcCCuuGACGu -3'
miRNA:   3'- gUCgAGG-CCUGUUCAACA----GGuuUUGU- -5'
13377 3' -49.1 NC_003409.1 + 10023 0.68 0.987506
Target:  5'- -uGCUgCCGGcgGCGGGggGUCCAcGGACAa -3'
miRNA:   3'- guCGA-GGCC--UGUUCaaCAGGU-UUUGU- -5'
13377 3' -49.1 NC_003409.1 + 61129 0.69 0.979624
Target:  5'- --uCUCUGGACAGGgcGUCCGu-GCAg -3'
miRNA:   3'- gucGAGGCCUGUUCaaCAGGUuuUGU- -5'
13377 3' -49.1 NC_003409.1 + 58373 0.7 0.957788
Target:  5'- uCAGaCUCCGuGGuCGAGUUGUgCAAAAUAc -3'
miRNA:   3'- -GUC-GAGGC-CU-GUUCAACAgGUUUUGU- -5'
13377 3' -49.1 NC_003409.1 + 10209 0.7 0.957788
Target:  5'- gCAGCUgCGuguaaGACAGGUUGUCCGuGGACc -3'
miRNA:   3'- -GUCGAgGC-----CUGUUCAACAGGU-UUUGu -5'
13377 3' -49.1 NC_003409.1 + 5555 0.7 0.953708
Target:  5'- -uGCUCCGGugGAGUUGgaaAAGAUg -3'
miRNA:   3'- guCGAGGCCugUUCAACaggUUUUGu -5'
13377 3' -49.1 NC_003409.1 + 98175 0.7 0.953708
Target:  5'- aAGCUaCUGGACAGGgcucgUG-CCAGGGCGc -3'
miRNA:   3'- gUCGA-GGCCUGUUCa----ACaGGUUUUGU- -5'
13377 3' -49.1 NC_003409.1 + 26923 0.72 0.923691
Target:  5'- -uGUUuuGGACAAcUUGUCCGGAGCu -3'
miRNA:   3'- guCGAggCCUGUUcAACAGGUUUUGu -5'
13377 3' -49.1 NC_003409.1 + 26761 1.09 0.011389
Target:  5'- gCAGCUCCGGACAAGUUGUCCAAAACAc -3'
miRNA:   3'- -GUCGAGGCCUGUUCAACAGGUUUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.