Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13379 | 3' | -47.2 | NC_003409.1 | + | 11147 | 0.66 | 0.999817 |
Target: 5'- cCCuGCGAUCU--ACGUcGGGGUAGAUc -3' miRNA: 3'- -GGuCGUUAGGuaUGCGcUCCUAUUUG- -5' |
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13379 | 3' | -47.2 | NC_003409.1 | + | 70181 | 0.66 | 0.999787 |
Target: 5'- aUCAGCAcacucuagaacuacUCCAUAUGCcGGGGUGcGCg -3' miRNA: 3'- -GGUCGUu-------------AGGUAUGCGcUCCUAUuUG- -5' |
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13379 | 3' | -47.2 | NC_003409.1 | + | 26348 | 0.66 | 0.999618 |
Target: 5'- uCCAGCucUCCGguacagGCGCaGGGGUGuauGCc -3' miRNA: 3'- -GGUCGuuAGGUa-----UGCGcUCCUAUu--UG- -5' |
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13379 | 3' | -47.2 | NC_003409.1 | + | 52472 | 0.66 | 0.999699 |
Target: 5'- gUCuGCGAuuUCCGcguCGCGAGGAauGGCg -3' miRNA: 3'- -GGuCGUU--AGGUau-GCGCUCCUauUUG- -5' |
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13379 | 3' | -47.2 | NC_003409.1 | + | 131228 | 0.66 | 0.999765 |
Target: 5'- gCCAGCuacgCCA-GCGCcaGGGGAUGGGu -3' miRNA: 3'- -GGUCGuua-GGUaUGCG--CUCCUAUUUg -5' |
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13379 | 3' | -47.2 | NC_003409.1 | + | 85844 | 0.66 | 0.999765 |
Target: 5'- aCCAGCGGUaaagGCGCGAaaugguagaggGGGUGGAa -3' miRNA: 3'- -GGUCGUUAgguaUGCGCU-----------CCUAUUUg -5' |
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13379 | 3' | -47.2 | NC_003409.1 | + | 26863 | 0.66 | 0.999765 |
Target: 5'- -aGGCGGa--GaGCGCGGGGGUGGACg -3' miRNA: 3'- ggUCGUUaggUaUGCGCUCCUAUUUG- -5' |
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13379 | 3' | -47.2 | NC_003409.1 | + | 52587 | 0.66 | 0.999817 |
Target: 5'- uCCAGCAGgcguggcggCCAagGgGCGGGGAcguGGCa -3' miRNA: 3'- -GGUCGUUa--------GGUa-UgCGCUCCUau-UUG- -5' |
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13379 | 3' | -47.2 | NC_003409.1 | + | 135175 | 0.67 | 0.998866 |
Target: 5'- uCCAGCAcauGUCCAUGCua-AGGAaaUAAACc -3' miRNA: 3'- -GGUCGU---UAGGUAUGcgcUCCU--AUUUG- -5' |
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13379 | 3' | -47.2 | NC_003409.1 | + | 28963 | 0.67 | 0.998866 |
Target: 5'- gCCAGUuguagCCcccuuuuaugAUAUGCGAGGAUAcuuAACg -3' miRNA: 3'- -GGUCGuua--GG----------UAUGCGCUCCUAU---UUG- -5' |
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13379 | 3' | -47.2 | NC_003409.1 | + | 96476 | 0.67 | 0.998843 |
Target: 5'- gCCAGCuGUCCccACGCuggacagcacacuGAGGGUuGGCg -3' miRNA: 3'- -GGUCGuUAGGuaUGCG-------------CUCCUAuUUG- -5' |
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13379 | 3' | -47.2 | NC_003409.1 | + | 109681 | 0.67 | 0.999398 |
Target: 5'- uCCAGCugaggcuUCCA-GCGUGAGGuacGGCa -3' miRNA: 3'- -GGUCGuu-----AGGUaUGCGCUCCuauUUG- -5' |
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13379 | 3' | -47.2 | NC_003409.1 | + | 109767 | 0.67 | 0.998866 |
Target: 5'- uCCuGCAcguugacgugGUgCCAUcGCGCGGGGAaAAACa -3' miRNA: 3'- -GGuCGU----------UA-GGUA-UGCGCUCCUaUUUG- -5' |
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13379 | 3' | -47.2 | NC_003409.1 | + | 106371 | 0.67 | 0.999398 |
Target: 5'- aCAGCAGUuuUCAUAUcugGGGGGUGAACu -3' miRNA: 3'- gGUCGUUA--GGUAUGcg-CUCCUAUUUG- -5' |
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13379 | 3' | -47.2 | NC_003409.1 | + | 58553 | 0.68 | 0.997101 |
Target: 5'- uUCGGUGAUCCG-AgGCGAGGAa---- -3' miRNA: 3'- -GGUCGUUAGGUaUgCGCUCCUauuug -5' |
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13379 | 3' | -47.2 | NC_003409.1 | + | 54446 | 0.68 | 0.998616 |
Target: 5'- --uGCGGUgUGUGCGCGAGGAcgcGCa -3' miRNA: 3'- gguCGUUAgGUAUGCGCUCCUauuUG- -5' |
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13379 | 3' | -47.2 | NC_003409.1 | + | 104315 | 0.68 | 0.997974 |
Target: 5'- cCCAGUcGUCUGUGCG-GAGGAa---- -3' miRNA: 3'- -GGUCGuUAGGUAUGCgCUCCUauuug -5' |
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13379 | 3' | -47.2 | NC_003409.1 | + | 117207 | 0.68 | 0.996946 |
Target: 5'- gCAGCAGUCCGccgauaucuuguagUugGgGAGGuuauccAUAAGCa -3' miRNA: 3'- gGUCGUUAGGU--------------AugCgCUCC------UAUUUG- -5' |
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13379 | 3' | -47.2 | NC_003409.1 | + | 31070 | 0.68 | 0.99757 |
Target: 5'- aCCAcGCAuacaCCAUGCGCGGcGGUGGAg -3' miRNA: 3'- -GGU-CGUua--GGUAUGCGCUcCUAUUUg -5' |
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13379 | 3' | -47.2 | NC_003409.1 | + | 88688 | 0.69 | 0.996558 |
Target: 5'- gCCGGCAGg-CAgggGCGCGGGGGcu-GCa -3' miRNA: 3'- -GGUCGUUagGUa--UGCGCUCCUauuUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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