Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13379 | 3' | -47.2 | NC_003409.1 | + | 132671 | 0.73 | 0.947406 |
Target: 5'- aCAGCGccagCCAgggggACGgGGGGGUGGACg -3' miRNA: 3'- gGUCGUua--GGUa----UGCgCUCCUAUUUG- -5' |
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13379 | 3' | -47.2 | NC_003409.1 | + | 130092 | 0.78 | 0.793111 |
Target: 5'- aCAGCug-CUAUACGCGGGGGUugauAAACg -3' miRNA: 3'- gGUCGuuaGGUAUGCGCUCCUA----UUUG- -5' |
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13379 | 3' | -47.2 | NC_003409.1 | + | 33690 | 1.14 | 0.00962 |
Target: 5'- uCCAGCAAUCCAUACGCGAGGAUAAACa -3' miRNA: 3'- -GGUCGUUAGGUAUGCGCUCCUAUUUG- -5' |
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13379 | 3' | -47.2 | NC_003409.1 | + | 88688 | 0.69 | 0.996558 |
Target: 5'- gCCGGCAGg-CAgggGCGCGGGGGcu-GCa -3' miRNA: 3'- -GGUCGUUagGUa--UGCGCUCCUauuUG- -5' |
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13379 | 3' | -47.2 | NC_003409.1 | + | 63356 | 0.7 | 0.992455 |
Target: 5'- uCC-GCGAUCaCAUACGUGAauggaccaagcaGGAUGGAUa -3' miRNA: 3'- -GGuCGUUAG-GUAUGCGCU------------CCUAUUUG- -5' |
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13379 | 3' | -47.2 | NC_003409.1 | + | 16247 | 0.7 | 0.991292 |
Target: 5'- aCCGGCuauuGUUCA-GCGUGAGGugcUGAGCa -3' miRNA: 3'- -GGUCGu---UAGGUaUGCGCUCCu--AUUUG- -5' |
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13379 | 3' | -47.2 | NC_003409.1 | + | 70181 | 0.66 | 0.999787 |
Target: 5'- aUCAGCAcacucuagaacuacUCCAUAUGCcGGGGUGcGCg -3' miRNA: 3'- -GGUCGUu-------------AGGUAUGCGcUCCUAUuUG- -5' |
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13379 | 3' | -47.2 | NC_003409.1 | + | 135175 | 0.67 | 0.998866 |
Target: 5'- uCCAGCAcauGUCCAUGCua-AGGAaaUAAACc -3' miRNA: 3'- -GGUCGU---UAGGUAUGcgcUCCU--AUUUG- -5' |
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13379 | 3' | -47.2 | NC_003409.1 | + | 28963 | 0.67 | 0.998866 |
Target: 5'- gCCAGUuguagCCcccuuuuaugAUAUGCGAGGAUAcuuAACg -3' miRNA: 3'- -GGUCGuua--GG----------UAUGCGCUCCUAU---UUG- -5' |
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13379 | 3' | -47.2 | NC_003409.1 | + | 131243 | 0.69 | 0.995222 |
Target: 5'- aCCAacGCGG-CCAcacgGCGCGGGGAggugGGGCa -3' miRNA: 3'- -GGU--CGUUaGGUa---UGCGCUCCUa---UUUG- -5' |
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13379 | 3' | -47.2 | NC_003409.1 | + | 40484 | 0.72 | 0.967227 |
Target: 5'- aCCAGCGGacggacgcaaCGUACGUGGGGAUcgGCu -3' miRNA: 3'- -GGUCGUUag--------GUAUGCGCUCCUAuuUG- -5' |
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13379 | 3' | -47.2 | NC_003409.1 | + | 106371 | 0.67 | 0.999398 |
Target: 5'- aCAGCAGUuuUCAUAUcugGGGGGUGAACu -3' miRNA: 3'- gGUCGUUA--GGUAUGcg-CUCCUAUUUG- -5' |
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13379 | 3' | -47.2 | NC_003409.1 | + | 130884 | 0.71 | 0.984405 |
Target: 5'- cCCAGCGcuggggugguguggGUCCGUACGUguaugguGAGGAUuccGACc -3' miRNA: 3'- -GGUCGU--------------UAGGUAUGCG-------CUCCUAu--UUG- -5' |
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13379 | 3' | -47.2 | NC_003409.1 | + | 96476 | 0.67 | 0.998843 |
Target: 5'- gCCAGCuGUCCccACGCuggacagcacacuGAGGGUuGGCg -3' miRNA: 3'- -GGUCGuUAGGuaUGCG-------------CUCCUAuUUG- -5' |
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13379 | 3' | -47.2 | NC_003409.1 | + | 26348 | 0.66 | 0.999618 |
Target: 5'- uCCAGCucUCCGguacagGCGCaGGGGUGuauGCc -3' miRNA: 3'- -GGUCGuuAGGUa-----UGCGcUCCUAUu--UG- -5' |
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13379 | 3' | -47.2 | NC_003409.1 | + | 61867 | 0.7 | 0.986767 |
Target: 5'- -aGGCAGUCCAggucgACaGCGGGGAcggggggUGAGCc -3' miRNA: 3'- ggUCGUUAGGUa----UG-CGCUCCU-------AUUUG- -5' |
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13379 | 3' | -47.2 | NC_003409.1 | + | 18515 | 0.75 | 0.894872 |
Target: 5'- aCAGUaaaguguagGAUCCAUGcCGCGAGGGUAu-- -3' miRNA: 3'- gGUCG---------UUAGGUAU-GCGCUCCUAUuug -5' |
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13379 | 3' | -47.2 | NC_003409.1 | + | 42195 | 0.7 | 0.989991 |
Target: 5'- aUCAGCAGcUUCAUggccACGUGGGGGUGGcACg -3' miRNA: 3'- -GGUCGUU-AGGUA----UGCGCUCCUAUU-UG- -5' |
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13379 | 3' | -47.2 | NC_003409.1 | + | 68383 | 0.69 | 0.995222 |
Target: 5'- gCGGCgAAUCUgaAUAUGaCGAGGAUGAGg -3' miRNA: 3'- gGUCG-UUAGG--UAUGC-GCUCCUAUUUg -5' |
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13379 | 3' | -47.2 | NC_003409.1 | + | 117207 | 0.68 | 0.996946 |
Target: 5'- gCAGCAGUCCGccgauaucuuguagUugGgGAGGuuauccAUAAGCa -3' miRNA: 3'- gGUCGUUAGGU--------------AugCgCUCC------UAUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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