miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13384 5' -58.7 NC_003409.1 + 7200 0.68 0.645343
Target:  5'- -aACCagggCaCCAGucuGCAGGCCAugCUCCc -3'
miRNA:   3'- caUGGa---GcGGUC---CGUCCGGUugGAGG- -5'
13384 5' -58.7 NC_003409.1 + 13683 0.66 0.782776
Target:  5'- -gACC-CGCUAGGCGuuccGGCgAgaugGCCUCUa -3'
miRNA:   3'- caUGGaGCGGUCCGU----CCGgU----UGGAGG- -5'
13384 5' -58.7 NC_003409.1 + 15705 0.71 0.495698
Target:  5'- -cACCUUGCCAcGUagcgauuaGGGCCGACCgCCa -3'
miRNA:   3'- caUGGAGCGGUcCG--------UCCGGUUGGaGG- -5'
13384 5' -58.7 NC_003409.1 + 18138 0.67 0.705871
Target:  5'- -aGCCUaacugGCCAGG--GGCCAgugagcGCCUCCc -3'
miRNA:   3'- caUGGAg----CGGUCCguCCGGU------UGGAGG- -5'
13384 5' -58.7 NC_003409.1 + 27841 0.68 0.645343
Target:  5'- -aGCgaCGCCGGcGCAGGCCGcACCg-- -3'
miRNA:   3'- caUGgaGCGGUC-CGUCCGGU-UGGagg -5'
13384 5' -58.7 NC_003409.1 + 30677 0.7 0.514957
Target:  5'- uGUACaauaCGCCuucAGGCcucGCCAGCCUCCg -3'
miRNA:   3'- -CAUGga--GCGG---UCCGuc-CGGUUGGAGG- -5'
13384 5' -58.7 NC_003409.1 + 31705 0.71 0.485245
Target:  5'- -gGCCUuuaaauaCGCCGGGCucaauaugcuGGCCAcACCUCUg -3'
miRNA:   3'- caUGGA-------GCGGUCCGu---------CCGGU-UGGAGG- -5'
13384 5' -58.7 NC_003409.1 + 34302 0.69 0.568321
Target:  5'- -cGCCgaCGCCAGGCaucucacggacacccAGGCCGcgcuuuGCCUCg -3'
miRNA:   3'- caUGGa-GCGGUCCG---------------UCCGGU------UGGAGg -5'
13384 5' -58.7 NC_003409.1 + 42748 0.66 0.745106
Target:  5'- ---aCUCGCaccugCAGGCAGaGCUGACCUUa -3'
miRNA:   3'- caugGAGCG-----GUCCGUC-CGGUUGGAGg -5'
13384 5' -58.7 NC_003409.1 + 42766 0.93 0.018105
Target:  5'- cGUACCUCGCCAcGG-AGGCCAACCUCCu -3'
miRNA:   3'- -CAUGGAGCGGU-CCgUCCGGUUGGAGG- -5'
13384 5' -58.7 NC_003409.1 + 42939 0.66 0.773536
Target:  5'- -aAUCUgCGUUAGG-AGGUUGGCCUCCg -3'
miRNA:   3'- caUGGA-GCGGUCCgUCCGGUUGGAGG- -5'
13384 5' -58.7 NC_003409.1 + 43648 0.69 0.604668
Target:  5'- cUACgUUGUCAGGgGuGCCAACCUCg -3'
miRNA:   3'- cAUGgAGCGGUCCgUcCGGUUGGAGg -5'
13384 5' -58.7 NC_003409.1 + 47281 0.66 0.764173
Target:  5'- --uCCgCGUUAGGCgcaggcuguccGGGCgAACCUCCu -3'
miRNA:   3'- cauGGaGCGGUCCG-----------UCCGgUUGGAGG- -5'
13384 5' -58.7 NC_003409.1 + 51982 0.67 0.725648
Target:  5'- aGUGCCggGuCCGGcGUAGcacgcGCCAGCCUCUg -3'
miRNA:   3'- -CAUGGagC-GGUC-CGUC-----CGGUUGGAGG- -5'
13384 5' -58.7 NC_003409.1 + 57950 0.66 0.751827
Target:  5'- --gUCUCGUCcgggugcaaaAGGguGGCCAgcaacguuuucaccACCUCCu -3'
miRNA:   3'- cauGGAGCGG----------UCCguCCGGU--------------UGGAGG- -5'
13384 5' -58.7 NC_003409.1 + 60132 0.66 0.786435
Target:  5'- -aACuUUCGCCAGGCGGcgcugcggcgggagaGCCAAUCUgaugCCa -3'
miRNA:   3'- caUG-GAGCGGUCCGUC---------------CGGUUGGA----GG- -5'
13384 5' -58.7 NC_003409.1 + 83331 0.67 0.725648
Target:  5'- -gACCUCGCCAaGaAGGUUAcauGCCUCUa -3'
miRNA:   3'- caUGGAGCGGUcCgUCCGGU---UGGAGG- -5'
13384 5' -58.7 NC_003409.1 + 87634 0.68 0.624995
Target:  5'- gGUGCCgaaggCGCUugcgGGGCaucacagaAGGCCGGgCUCCu -3'
miRNA:   3'- -CAUGGa----GCGG----UCCG--------UCCGGUUgGAGG- -5'
13384 5' -58.7 NC_003409.1 + 90087 0.67 0.725648
Target:  5'- -cGCCUCGU--GGUAGGCCucucgugUCUCCg -3'
miRNA:   3'- caUGGAGCGguCCGUCCGGuu-----GGAGG- -5'
13384 5' -58.7 NC_003409.1 + 92914 0.67 0.695886
Target:  5'- -gGCCUCuGUCAuGGguuCAGGCCAggaGCUUCCu -3'
miRNA:   3'- caUGGAG-CGGU-CC---GUCCGGU---UGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.