Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13384 | 5' | -58.7 | NC_003409.1 | + | 117520 | 0.74 | 0.340385 |
Target: 5'- uGUGCUUUGCU-GG-AGGCCAACUUCCg -3' miRNA: 3'- -CAUGGAGCGGuCCgUCCGGUUGGAGG- -5' |
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13384 | 5' | -58.7 | NC_003409.1 | + | 112010 | 0.66 | 0.754693 |
Target: 5'- -gGCCUgGCCucgaAGGCAcGGUgAACgUCCc -3' miRNA: 3'- caUGGAgCGG----UCCGU-CCGgUUGgAGG- -5' |
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13384 | 5' | -58.7 | NC_003409.1 | + | 118621 | 0.68 | 0.64636 |
Target: 5'- cGUGCCgccgcgcgcguaaugCGCgAGGgGGGUCggUCUCCc -3' miRNA: 3'- -CAUGGa--------------GCGgUCCgUCCGGuuGGAGG- -5' |
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13384 | 5' | -58.7 | NC_003409.1 | + | 7200 | 0.68 | 0.645343 |
Target: 5'- -aACCagggCaCCAGucuGCAGGCCAugCUCCc -3' miRNA: 3'- caUGGa---GcGGUC---CGUCCGGUugGAGG- -5' |
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13384 | 5' | -58.7 | NC_003409.1 | + | 123802 | 0.69 | 0.584422 |
Target: 5'- -aGCUUCccagGCUAGGCGGGCCAuuuguACUUUCu -3' miRNA: 3'- caUGGAG----CGGUCCGUCCGGU-----UGGAGG- -5' |
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13384 | 5' | -58.7 | NC_003409.1 | + | 15705 | 0.71 | 0.495698 |
Target: 5'- -cACCUUGCCAcGUagcgauuaGGGCCGACCgCCa -3' miRNA: 3'- caUGGAGCGGUcCG--------UCCGGUUGGaGG- -5' |
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13384 | 5' | -58.7 | NC_003409.1 | + | 94725 | 0.66 | 0.782776 |
Target: 5'- -gACCggaGUCA-GCAGGCCGAUCgaggCCg -3' miRNA: 3'- caUGGag-CGGUcCGUCCGGUUGGa---GG- -5' |
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13384 | 5' | -58.7 | NC_003409.1 | + | 90087 | 0.67 | 0.725648 |
Target: 5'- -cGCCUCGU--GGUAGGCCucucgugUCUCCg -3' miRNA: 3'- caUGGAGCGguCCGUCCGGuu-----GGAGG- -5' |
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13384 | 5' | -58.7 | NC_003409.1 | + | 43648 | 0.69 | 0.604668 |
Target: 5'- cUACgUUGUCAGGgGuGCCAACCUCg -3' miRNA: 3'- cAUGgAGCGGUCCgUcCGGUUGGAGg -5' |
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13384 | 5' | -58.7 | NC_003409.1 | + | 31705 | 0.71 | 0.485245 |
Target: 5'- -gGCCUuuaaauaCGCCGGGCucaauaugcuGGCCAcACCUCUg -3' miRNA: 3'- caUGGA-------GCGGUCCGu---------CCGGU-UGGAGG- -5' |
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13384 | 5' | -58.7 | NC_003409.1 | + | 94840 | 0.72 | 0.39649 |
Target: 5'- uGUACUUC-CCGGGCAugaugaauauGGCCcuCCUCCu -3' miRNA: 3'- -CAUGGAGcGGUCCGU----------CCGGuuGGAGG- -5' |
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13384 | 5' | -58.7 | NC_003409.1 | + | 133694 | 0.66 | 0.782776 |
Target: 5'- -aGCCUgcacCGCCAGcgguaGCAGGUCuGCCcCCa -3' miRNA: 3'- caUGGA----GCGGUC-----CGUCCGGuUGGaGG- -5' |
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13384 | 5' | -58.7 | NC_003409.1 | + | 108586 | 0.72 | 0.413578 |
Target: 5'- gGUACaggaaGCgGaGCAGGCCGGCCUCCu -3' miRNA: 3'- -CAUGgag--CGgUcCGUCCGGUUGGAGG- -5' |
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13384 | 5' | -58.7 | NC_003409.1 | + | 18138 | 0.67 | 0.705871 |
Target: 5'- -aGCCUaacugGCCAGG--GGCCAgugagcGCCUCCc -3' miRNA: 3'- caUGGAg----CGGUCCguCCGGU------UGGAGG- -5' |
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13384 | 5' | -58.7 | NC_003409.1 | + | 60132 | 0.66 | 0.786435 |
Target: 5'- -aACuUUCGCCAGGCGGcgcugcggcgggagaGCCAAUCUgaugCCa -3' miRNA: 3'- caUG-GAGCGGUCCGUC---------------CGGUUGGA----GG- -5' |
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13384 | 5' | -58.7 | NC_003409.1 | + | 42766 | 0.93 | 0.018105 |
Target: 5'- cGUACCUCGCCAcGG-AGGCCAACCUCCu -3' miRNA: 3'- -CAUGGAGCGGU-CCgUCCGGUUGGAGG- -5' |
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13384 | 5' | -58.7 | NC_003409.1 | + | 27841 | 0.68 | 0.645343 |
Target: 5'- -aGCgaCGCCGGcGCAGGCCGcACCg-- -3' miRNA: 3'- caUGgaGCGGUC-CGUCCGGU-UGGagg -5' |
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13384 | 5' | -58.7 | NC_003409.1 | + | 108913 | 0.68 | 0.655505 |
Target: 5'- uGUAgCUCgGCCAGcuuuuccuGCAGGCCAGCUagcuggggcgagUCCc -3' miRNA: 3'- -CAUgGAG-CGGUC--------CGUCCGGUUGG------------AGG- -5' |
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13384 | 5' | -58.7 | NC_003409.1 | + | 107208 | 0.67 | 0.685848 |
Target: 5'- -aGCCUUGUCAcGGCAguGGCCcACUugUCCg -3' miRNA: 3'- caUGGAGCGGU-CCGU--CCGGuUGG--AGG- -5' |
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13384 | 5' | -58.7 | NC_003409.1 | + | 92914 | 0.67 | 0.695886 |
Target: 5'- -gGCCUCuGUCAuGGguuCAGGCCAggaGCUUCCu -3' miRNA: 3'- caUGGAG-CGGU-CC---GUCCGGU---UGGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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