miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13388 5' -58.6 NC_003409.1 + 47207 1.08 0.00146
Target:  5'- aACACCCAGCUAGCAGUGCUACCCCCAu -3'
miRNA:   3'- -UGUGGGUCGAUCGUCACGAUGGGGGU- -5'
13388 5' -58.6 NC_003409.1 + 114427 0.75 0.246488
Target:  5'- gGC-CCCAGUUuaugcuaagGGCGGUGCUACCgCCAu -3'
miRNA:   3'- -UGuGGGUCGA---------UCGUCACGAUGGgGGU- -5'
13388 5' -58.6 NC_003409.1 + 133698 0.75 0.271354
Target:  5'- uGCACcgCCAGCggUAGCAG-GuCUGCCCCCAg -3'
miRNA:   3'- -UGUG--GGUCG--AUCGUCaC-GAUGGGGGU- -5'
13388 5' -58.6 NC_003409.1 + 56828 0.73 0.34224
Target:  5'- gGCACCCugaAGUcgUAGCAGUGUUGCuuaaaCCCCAg -3'
miRNA:   3'- -UGUGGG---UCG--AUCGUCACGAUG-----GGGGU- -5'
13388 5' -58.6 NC_003409.1 + 87793 0.73 0.350022
Target:  5'- aGCAgCCAGCUGaauccUGCUGCCCCCAg -3'
miRNA:   3'- -UGUgGGUCGAUcguc-ACGAUGGGGGU- -5'
13388 5' -58.6 NC_003409.1 + 24212 0.69 0.527729
Target:  5'- gGCGCgCCAGCggugGGCGGgGCcccauccucccgGCCCCCAu -3'
miRNA:   3'- -UGUG-GGUCGa---UCGUCaCGa-----------UGGGGGU- -5'
13388 5' -58.6 NC_003409.1 + 14194 0.69 0.549722
Target:  5'- uGCGCuCCgAGCUGGCAGaGC-ACCCCgAg -3'
miRNA:   3'- -UGUG-GG-UCGAUCGUCaCGaUGGGGgU- -5'
13388 5' -58.6 NC_003409.1 + 132656 0.68 0.600625
Target:  5'- uCGCCCaacaGGCUGGC-GUGggACCCCUg -3'
miRNA:   3'- uGUGGG----UCGAUCGuCACgaUGGGGGu -5'
13388 5' -58.6 NC_003409.1 + 47361 0.68 0.621199
Target:  5'- cACugCUAGCUGGguGuUGCUGUCCCa- -3'
miRNA:   3'- -UGugGGUCGAUCguC-ACGAUGGGGgu -5'
13388 5' -58.6 NC_003409.1 + 128072 0.68 0.621199
Target:  5'- -gGCCCAuGCggGGCucUGCUGCCCUCAc -3'
miRNA:   3'- ugUGGGU-CGa-UCGucACGAUGGGGGU- -5'
13388 5' -58.6 NC_003409.1 + 32294 0.68 0.635625
Target:  5'- gGCAUCCAgGCUGGCGGacaccucccacgugGCcagaGCCCCCGu -3'
miRNA:   3'- -UGUGGGU-CGAUCGUCa-------------CGa---UGGGGGU- -5'
13388 5' -58.6 NC_003409.1 + 33066 0.67 0.652104
Target:  5'- cGCACCCAGCguucguGUucaucGCUGCCCCa- -3'
miRNA:   3'- -UGUGGGUCGau----CGuca--CGAUGGGGgu -5'
13388 5' -58.6 NC_003409.1 + 26344 0.67 0.656218
Target:  5'- gACAUCCAGCUcuccgguacaggcgcAGgGGUGUaUGCCCUCGu -3'
miRNA:   3'- -UGUGGGUCGA---------------UCgUCACG-AUGGGGGU- -5'
13388 5' -58.6 NC_003409.1 + 130759 0.67 0.662384
Target:  5'- -gGCCCAGCUgGGCAGcaccguCCCCCGc -3'
miRNA:   3'- ugUGGGUCGA-UCGUCacgau-GGGGGU- -5'
13388 5' -58.6 NC_003409.1 + 23754 0.67 0.67264
Target:  5'- gGCaACCuCAGCUgggaauaccAGCGGa-CUACCCCCAa -3'
miRNA:   3'- -UG-UGG-GUCGA---------UCGUCacGAUGGGGGU- -5'
13388 5' -58.6 NC_003409.1 + 88201 0.67 0.67264
Target:  5'- gGCGCCUuagGGggAGCAgGUGCUgcaGCCCCUg -3'
miRNA:   3'- -UGUGGG---UCgaUCGU-CACGA---UGGGGGu -5'
13388 5' -58.6 NC_003409.1 + 119226 0.67 0.672641
Target:  5'- gGCaACCuCAGCUgggaauaccAGCGGa-CUACCCCCAa -3'
miRNA:   3'- -UG-UGG-GUCGA---------UCGUCacGAUGGGGGU- -5'
13388 5' -58.6 NC_003409.1 + 51807 0.67 0.682863
Target:  5'- aACugCagaGGCUGGCGcGUGCUACgCCgGa -3'
miRNA:   3'- -UGugGg--UCGAUCGU-CACGAUGgGGgU- -5'
13388 5' -58.6 NC_003409.1 + 42009 0.67 0.703171
Target:  5'- aGCGagaCCAGCUcuCcGUGCcACCCCCAc -3'
miRNA:   3'- -UGUg--GGUCGAucGuCACGaUGGGGGU- -5'
13388 5' -58.6 NC_003409.1 + 76780 0.67 0.703171
Target:  5'- gGCA-CCAGgaGGCGGUuuaGCggUGCCCCCGu -3'
miRNA:   3'- -UGUgGGUCgaUCGUCA---CG--AUGGGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.